View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2034_low_3 (Length: 487)

Name: NF2034_low_3
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2034_low_3
NF2034_low_3
[»] chr3 (3 HSPs)
chr3 (13-468)||(35060247-35060701)
chr3 (339-377)||(17105273-17105311)
chr3 (336-365)||(54591999-54592028)
[»] chr4 (3 HSPs)
chr4 (336-382)||(9018875-9018921)
chr4 (343-376)||(22402398-22402431)
chr4 (336-373)||(55575106-55575143)
[»] chr8 (3 HSPs)
chr8 (339-376)||(3943761-3943798)
chr8 (340-373)||(8431277-8431310)
chr8 (339-376)||(11556955-11556992)
[»] chr5 (2 HSPs)
chr5 (339-376)||(26208017-26208054)
chr5 (346-376)||(14332171-14332201)
[»] chr7 (1 HSPs)
chr7 (346-376)||(6632438-6632468)
[»] chr6 (4 HSPs)
chr6 (339-376)||(8013849-8013886)
chr6 (339-376)||(34443055-34443092)
chr6 (340-376)||(26493525-26493561)
chr6 (339-371)||(29236269-29236301)
[»] chr1 (2 HSPs)
chr1 (339-376)||(10042302-10042339)
chr1 (325-370)||(12405950-12405995)


Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Original strand, 35060247 - 35060701
Alignment:
Q  13 cagataggatgagtttccttcatgagctttatttttgactcacacaaagcattaactttgaggagcaataagtttagaagaattagcgcatagatagcaa 112  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060247 cagataggatgagtt-ccttcatgagctttatttttgacgcacacaaagctttaactttgaggagcaataagtttagaagaattagcgcatagatagcaa 35060345  T
Q  113 aggaattttctttatttttcagttttactagttggaatgatgtcctcagcatatagattttgttttgcctctttttgactaaatggttttctttggtggt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||    
T  35060346 aggaattttctttatttttcagttttactagttggaatgatgtcctcagcatatagattttgttttgcctctttttgactaaatagttttcttctgtggt 35060445  T
Q  213 aaatgcttctcaaaagcagtagctataactaatggaaaatacgataagggtggtgattaaaaggtagtagtgatacacttgaatgctaattcaaacatag 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060446 aaatgcttctcaaaagcagtagctataactaatggaaaatacgataagagtagtgattaaaaggtagtagtgatacacttgaatgctaattcaaacatag 35060545  T
Q  313 aacatgacatactgacccgtccatagtaatttgagaaaataaaagtgattgaatgtaaccacattcatcgtattagatactaaacactttaaatctatga 412  Q
    ||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35060546 aacatgacatactgacccgtcgatggtaatttgagaaaataaaattgattgaatgtaaccacattcatcgtattagatactaaacactttaaatctaaga 35060645  T
Q  413 tgttgatgctgcatagctatagtgctatgtgttgagaaaaagctgcagtagtaccc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35060646 tgttgatgctgcatagctatagtgctatgtgttgagaaaaagctgcagtagtaccc 35060701  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 17105273 - 17105311
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacatt 377  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  17105273 taatttaagaaaataaaagtgattgaatgtaacctcatt 17105311  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 54592028 - 54591999
Alignment:
Q  336 tagtaatttgagaaaataaaagtgattgaa 365  Q
    ||||||||||||||||||||||||||||||    
T  54592028 tagtaatttgagaaaataaaagtgattgaa 54591999  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 9018921 - 9018875
Alignment:
Q  336 tagtaatttgagaaaataaaagtgattgaatgtaaccacattcatcg 382  Q
    ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  9018921 tagtaatttgagaaaatgaaagtaattgaatgtaaccacatgcatcg 9018875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 22402398 - 22402431
Alignment:
Q  343 ttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    ||||||||||| ||||||||||||||||||||||    
T  22402398 ttgagaaaatagaagtgattgaatgtaaccacat 22402431  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 373
Target Start/End: Complemental strand, 55575143 - 55575106
Alignment:
Q  336 tagtaatttgagaaaataaaagtgattgaatgtaacca 373  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  55575143 tagtaatttgagaaaatagaagtaattgaatgtaacca 55575106  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 3943761 - 3943798
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    |||||| |||||||||||||||||||||||||||||||    
T  3943761 taatttaagaaaataaaagtgattgaatgtaaccacat 3943798  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 373
Target Start/End: Complemental strand, 8431310 - 8431277
Alignment:
Q  340 aatttgagaaaataaaagtgattgaatgtaacca 373  Q
    ||||| ||||||||||||||||||||||||||||    
T  8431310 aatttaagaaaataaaagtgattgaatgtaacca 8431277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 11556992 - 11556955
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  11556992 taatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 26208054 - 26208017
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26208054 taatttgagaaaataaaagtgtttgaatgtaaccacat 26208017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 376
Target Start/End: Complemental strand, 14332201 - 14332171
Alignment:
Q  346 agaaaataaaagtgattgaatgtaaccacat 376  Q
    |||||||||||||||||||||||||||||||    
T  14332201 agaaaataaaagtgattgaatgtaaccacat 14332171  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 376
Target Start/End: Original strand, 6632438 - 6632468
Alignment:
Q  346 agaaaataaaagtgattgaatgtaaccacat 376  Q
    |||||||||||||||||||||||||||||||    
T  6632438 agaaaataaaagtgattgaatgtaaccacat 6632468  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 8013886 - 8013849
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  8013886 taatttgaaaaaatataagtgattgaatgtaaccacat 8013849  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 34443092 - 34443055
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    |||||||||||| | |||||||||||||||||||||||    
T  34443092 taatttgagaaagtgaaagtgattgaatgtaaccacat 34443055  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 376
Target Start/End: Complemental strand, 26493561 - 26493525
Alignment:
Q  340 aatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  26493561 aatttgagaaaatagaagtgattgaatgtaactacat 26493525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 371
Target Start/End: Original strand, 29236269 - 29236301
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaac 371  Q
    ||||||||||||||| |||||||||||||||||    
T  29236269 taatttgagaaaatagaagtgattgaatgtaac 29236301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 10042302 - 10042339
Alignment:
Q  339 taatttgagaaaataaaagtgattgaatgtaaccacat 376  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  10042302 taatttgtgaaaatagaagtgattgaatgtaaccacat 10042339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 370
Target Start/End: Original strand, 12405950 - 12405995
Alignment:
Q  325 tgacccgtccatagtaatttgagaaaataaaagtgattgaatgtaa 370  Q
    |||| ||||| |||||||||||||||||| |||||||||| |||||    
T  12405950 tgacacgtccgtagtaatttgagaaaatagaagtgattgattgtaa 12405995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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