View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2034_low_4 (Length: 486)

Name: NF2034_low_4
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2034_low_4
NF2034_low_4
[»] chr7 (5 HSPs)
chr7 (1-466)||(13010071-13010530)
chr7 (82-419)||(34692896-34693235)
chr7 (1-49)||(11482090-11482138)
chr7 (2-44)||(11668219-11668261)
chr7 (192-228)||(17160390-17160426)
[»] chr4 (3 HSPs)
chr4 (84-466)||(29575398-29575781)
chr4 (231-459)||(26000522-26000750)
chr4 (109-197)||(26000777-26000865)
[»] chr5 (7 HSPs)
chr5 (81-464)||(14810096-14810480)
chr5 (81-466)||(20699966-20700351)
chr5 (83-450)||(18587740-18588107)
chr5 (83-204)||(42563038-42563159)
chr5 (2-48)||(16364317-16364363)
chr5 (2-48)||(16364524-16364570)
chr5 (2-47)||(29384941-29384986)
[»] chr1 (3 HSPs)
chr1 (81-419)||(18656994-18657333)
chr1 (81-240)||(3230592-3230751)
chr1 (212-279)||(3230524-3230591)
[»] chr8 (2 HSPs)
chr8 (231-364)||(913948-914082)
chr8 (182-221)||(11737762-11737801)
[»] chr2 (5 HSPs)
chr2 (101-228)||(9680275-9680402)
chr2 (180-228)||(41687233-41687281)
chr2 (2-48)||(34323423-34323469)
chr2 (3-47)||(23081410-23081454)
chr2 (2-44)||(21265929-21265971)
[»] chr3 (2 HSPs)
chr3 (85-150)||(47244846-47244911)
chr3 (85-123)||(47244673-47244711)
[»] scaffold0862 (1 HSPs)
scaffold0862 (416-466)||(4464-4514)
[»] chr6 (1 HSPs)
chr6 (178-212)||(14835587-14835621)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 13010071 - 13010530
Alignment:
Q  1 aggtaagattgtattttttgtattcattaagtttcataattagagaatgcttttgactctagtctctagatannnnnnnnaagcaagcaaatttaagatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||        ||||||||||||||||| ||    
T  13010071 aggtaagattgtattttttgtattcattaagtttcataattagagaatgcttttgactctag-------atattttttttaagcaagcaaatttaaggtg 13010163  T
Q  101 tttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtgcaagagcatgggcgctacc 200  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13010164 tttcattcataataatagtagcaatacaaaaaggaattacatcaaaagtactgcgtgaaacatgggataagacttctcgtgcaagagcatgggcgctacc 13010263  T
Q  201 gtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaaccatactcagagagattcatc 300  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13010264 gtttccttgacgcctagtaaaaacaactacaaagtcgttatagtgatcaagtaaggttctacaattttggacaatcgaaccatactcagagagattcatc 13010363  T
Q  301 ttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatccactgaatgccgtcgtacaaac 399  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| |||||||| || |||||||    
T  13010364 ttaccgttgtgcacatcatccacaaccattttacaatcaagcttaaaaatcacattgtggtatcgtaatgaagaaatccattgaatgccttcatacaaac 13010463  T
Q  400 cccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt 466  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13010464 cccaagcttcaccctccgctattgtaatcacaacctcacaataagttgtcaaagctgcaacaaatgt 13010530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 82 - 419
Target Start/End: Complemental strand, 34693235 - 34692896
Alignment:
Q  82 agcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtg 181  Q
    ||||| |||||||||| |||||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||||  ||||||||||   ||||||     
T  34693235 agcaaacaaatttaaggtgtttcattcataataatagtaacgatacaaaaaggaattacatcaaaagtactgcgtgaagcatgggataaggtttctcgta 34693136  T
Q  182 caagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaag-tcgttatagtgatcaagtaaggttctacaattttggatgatcgaac 280  Q
    ||||||||||  |||||| |||||||||||||| |||||||||||||| |||| | ||||||||||||||||||| | |||||||||| ||| ||||||     
T  34693135 caagagcatgaacgctactgtttgcttgacgccaagtaaaaacaactacaaagtttgttatagtgatcaagtaagatcctacaattttagataatcgaat 34693036  T
Q  281 catactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatcca 379  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  |||||||||||    
T  34693035 catactcagcgagattcatcttactattgcgcacatcatccacaaccattttacaatcaagctcaaaaatcacattgtggtatcctaacgaagaaatcca 34692936  T
Q  380 ctgaatgccgtcgtacaaaccccaagcttcacccttcgct 419  Q
      ||||||| | ||||||||||||||||||||||| ||||    
T  34692935 tcgaatgccttggtacaaaccccaagcttcaccctccgct 34692896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 11482138 - 11482090
Alignment:
Q  1 aggtaagattgtattttttgtattcattaagtttcataattagagaatg 49  Q
    |||||||||| || |||| ||| ||||||||||||||||||||||||||    
T  11482138 aggtaagattatacttttggtaatcattaagtttcataattagagaatg 11482090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 11668261 - 11668219
Alignment:
Q  2 ggtaagattgtattttttgtattcattaagtttcataattaga 44  Q
    ||||||||||||||||| |||  ||||||||||||||||||||    
T  11668261 ggtaagattgtatttttggtagacattaagtttcataattaga 11668219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 17160390 - 17160426
Alignment:
Q  192 ggcgctaccgtttgcttgacgcctagtaaaaacaact 228  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  17160390 ggcgcttccgtttgcttgacgcctagtaaagacaact 17160426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 84 - 466
Target Start/End: Original strand, 29575398 - 29575781
Alignment:
Q  84 caagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtgca 183  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||  |||||||||| | |||||||||    
T  29575398 caagcaaatttaaggtgtttcattcataataatagtagcaatacaaaaaggaattacaacaaaagtactgcgtgaagcatgggataaggcttctcgtgca 29575497  T
Q  184 agagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaaccat 283  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  29575498 agagcatgagcgctaccatttgcttgacgcctagtaaaaacaactacaaagtcgttatagtgatcaagtaaggttctacagttttggatgattgaaccat 29575597  T
Q  284 actcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatccactg 382  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |||| |||||| ||||||||||| |||| |||||||||||| ||    
T  29575598 actcagagagattcatcttactattgtgcacatcatctacaaccattttacaatccagctcaaaaatgacattgtggtaccctaatgaagaaatccattg 29575697  T
Q  383 aatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt 466  Q
    |||||| | ||| ||||||||||||||||||| ||||| | | |||||| ||||| | |||| ||||||||| |||| ||||||    
T  29575698 aatgccttggtataaaccccaagcttcaccctccgctactttcatcacagcctcacagtaagctgtcaaagcagcaataaatgt 29575781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 231 - 459
Target Start/End: Complemental strand, 26000750 - 26000522
Alignment:
Q  231 aaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatt 330  Q
    |||||| ||| |||||||||||||||||||| |||||||||  ||||||| ||||| ||||||||| | |||| ||||||||||||||||||||||||||    
T  26000750 aaagtctttaaagtgatcaagtaaggttctaaaattttggagaatcgaac-atactgagagagattaagcttattgttgtgcacatcatccacaaccatt 26000652  T
Q  331 tt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatccactgaatgccgtcgtacaaaccccaagcttcacccttc-gctattgtaatc 428  Q
    || ||||| |||| ||||||||| || | ||||||||  ||||||||| | | |||| | |  |||||||||||| ||||||||  |  ||||||| |||    
T  26000651 ttacaatccagctcaaaaatcaccttatcgtatcctaaggaagaaatcgattcaatgtcttaatacaaaccccaa-cttcacccccctactattgtcatc 26000553  T
Q  429 acaacctcataataagttgtcaaagctgcaa 459  Q
    ||||||||| |||| ||||||| ||| ||||    
T  26000552 acaacctcacaatatgttgtcatagcagcaa 26000522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 26000865 - 26000777
Alignment:
Q  109 ataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtgcaagagcatgggcgct 197  Q
    ||||||||||||  |||||||  || |||||||||| ||||||   | |||  ||||||||||||  |||||||||||||||| |||||    
T  26000865 ataataatagtattaatataaggaggaattacatcataagtacattgagaagtatgggataagactactcgtgcaagagcatgagcgct 26000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 81 - 464
Target Start/End: Complemental strand, 14810480 - 14810096
Alignment:
Q  81 aagcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgt 180  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||| |||||  |||||||||||||||| || |||||  ||| |||||| | ||||||    
T  14810480 aagcaaacaaatttaaggtgtctcattcataataatagtagcaatacaaaaaagaattacatcaaaagtattgtgtgaagcatgagataaggcttctcgt 14810381  T
Q  181 gcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaac 280  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||| || ||||    
T  14810380 gcaagagcatgagcgctaccgtttgcctgacgcctagtaaaaacaactacaaagttgttatagtgatcaagtaaggttctataactttggataattgaac 14810281  T
Q  281 catactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatcca 379  Q
    ||||||||||||||||| ||||||  | |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||    
T  14810280 catactcagagagattcttcttacgatcgtgcacatcatccacaaccattttacaatcaagctcaaaaatgacattgtggtatcctaatgaagaaatcca 14810181  T
Q  380 ctgaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaat 464  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||  ||||||||    
T  14810180 ctgaatgccttggtacaaaccccaagcttcacccttcgctattgtcatcacagcctcacaataagttgtcaaggcaacaacaaat 14810096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 81 - 466
Target Start/End: Complemental strand, 20700351 - 20699966
Alignment:
Q  81 aagcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgt 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||  |||||||||| | ||| ||    
T  20700351 aagcaagcaaatttaaggtgtttcattcataataatagtagcaatacaaaaaggaattacatcaaaagtactgcgtgaagcatgggataaggcttcttgt 20700252  T
Q  181 gcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaac 280  Q
    | |||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||||| || ||||    
T  20700251 gaaagaacatgagcactaccgtttgcttgacgcctagtaaaaacaactacaaagtcgttatagtgatcaagtaaggttcta-gagtttggataattgaac 20700153  T
Q  281 catactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatcca 379  Q
    |||||||||| |||||||||||||| ||||||||||||||  |||||||||| |||||||||| |||||| |||| |||||| |||| ||||||||||||    
T  20700152 catactcagaaagattcatcttactattgtgcacatcatctgcaaccattttacaatcaagctcaaaaatgacatcgtggtaccctaatgaagaaatcca 20700053  T
Q  380 ctgaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt 466  Q
     |||||| | | ||||||| ||||||||||||||| | ||||| | ||| || ||||| ||||| |||||||||| |||||||||||    
T  20700052 ttgaatgtcttggtacaaatcccaagcttcaccctccactattatcatcgcagcctcacaataaattgtcaaagcagcaacaaatgt 20699966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 83 - 450
Target Start/End: Original strand, 18587740 - 18588107
Alignment:
Q  83 gcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtgc 182  Q
    ||||||||||||||| || ||||||||||||||||||||||||| |||| | ||||||||||||||||||| |||||  |||||||| |    ||||| |    
T  18587740 gcaagcaaatttaaggtgattcattcataataatagtagcaatacaaaagggaattacatcaaaagtactgtgtgaagtatgggatagggttgctcgtac 18587839  T
Q  183 aagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaacca 282  Q
    ||||||||| |||||| |||||| || |||||||||||||||||||| |||||||| ||||||||||  |||||||||| || ||||||| |||||| ||    
T  18587840 aagagcatgagcgctatcgtttgttttacgcctagtaaaaacaactacaaagtcgtaatagtgatcacataaggttctaaaaatttggataatcgaatca 18587939  T
Q  283 tactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatccact 381  Q
    |||| ||||||||| || ||||||||| ||||||||||||| ||| |||| ||||| |||| |||| |||  |||||||||||||  ||||||||||| |    
T  18587940 tacttagagagattaat-ttactgttgcgcacatcatccacgacccttttacaatctagctaaaaattcatcttgtggtatcctaacgaagaaatccatt 18588038  T
Q  382 gaatgccgtcgtacaaaccccaagcttcacccttcgctattgtaatcacaacctcataataagttgtca 450  Q
    ||||||| | |||||||||| ||||||  || |  |||||||| |||||| ||||||||||||||||||    
T  18588039 gaatgccttggtacaaaccctaagcttatccatctgctattgtcatcacagcctcataataagttgtca 18588107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 42563038 - 42563159
Alignment:
Q  83 gcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtgc 182  Q
    ||||||||| ||||| | ||| ||||||| ||||| ||||||||  |  || |||||||||||||||||| | ||||  |||||||||| |  ||| ||     
T  42563038 gcaagcaaacttaaggtcttttattcatagtaataatagcaatactaggagaaattacatcaaaagtacttcctgaagcatgggataaggctgctcatgt 42563137  T
Q  183 aagagcatgggcgctaccgttt 204  Q
     |||||||| ||||||||||||    
T  42563138 gagagcatgagcgctaccgttt 42563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 16364363 - 16364317
Alignment:
Q  2 ggtaagattgtattttttgtattcattaagtttcataattagagaat 48  Q
    ||||||||||||||||| |||  | ||||||||||||||||||||||    
T  16364363 ggtaagattgtatttttggtagacgttaagtttcataattagagaat 16364317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 16364570 - 16364524
Alignment:
Q  2 ggtaagattgtattttttgtattcattaagtttcataattagagaat 48  Q
    |||| |||||||||||| |||  ||||||||||||||||||||||||    
T  16364570 ggtaggattgtatttttggtacacattaagtttcataattagagaat 16364524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 29384986 - 29384941
Alignment:
Q  2 ggtaagattgtattttttgtattcattaagtttcataattagagaa 47  Q
    ||||||||||||||||| |||  |||||||||||||| ||||||||    
T  29384986 ggtaagattgtatttttggtagacattaagtttcatatttagagaa 29384941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 81 - 419
Target Start/End: Original strand, 18656994 - 18657333
Alignment:
Q  81 aagcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgt 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||  ||||| |||  | | ||||    
T  18656994 aagcaagcaaatttaagatgtttcattcataataatagtagcaatacaaaaaggaattacatcaaaagtaatgcgtgaagcatgggctaatgcttatcgt 18657093  T
Q  181 gcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaac 280  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  18657094 gcaagagcatgagcgctaccgtttgcttgacgcctagtaaaaacaactacaaattcgttataatgattaagtaaggttctacaattttggatgatcgaac 18657193  T
Q  281 catactcagagagattcatcttactgttgtgcacatcatccacaaccatttt-caatcaagcttaaaaatcacattgtggtatcctactgaagaaatcca 379  Q
    |||||||||||| ||||||||||||  ||| ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||||    
T  18657194 catactcagagatattcatcttactaatgtacacatcatccacaaccattttacaatcaagctcaaaaatgacattgtggtatcctaatgaagaaatcca 18657293  T
Q  380 ctgaatgccgtcgtacaaaccccaagcttcacccttcgct 419  Q
     |||||||| | ||||||||||||||||||||||| ||||    
T  18657294 ttgaatgccttggtacaaaccccaagcttcaccctccgct 18657333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 3230751 - 3230592
Alignment:
Q  81 aagcaagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgt 180  Q
    ||||||||||| ||| ||||||||||||||||||||| |||||||| || ||  |||||||||||||||| |  |||||  ||||||||||     ||||    
T  3230751 aagcaagcaaacttacgatgtttcattcataataatattagcaatacaagaaagaattacatcaaaagtattatgtgaagcatgggataaggttgttcgt 3230652  T
Q  181 gcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaactaaaaagtcgtta 240  Q
    |||||||||||  ||||   |||||||||| ||||| |||||||||||| ||||| ||||    
T  3230651 gcaagagcatgaacgctcttgtttgcttgatgcctaataaaaacaactacaaagttgtta 3230592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 3230591 - 3230524
Alignment:
Q  212 gcctagtaaaaacaactaaaaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaa 279  Q
    ||||| |||||||| ||| |||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  3230591 gcctaataaaaacagctacaaagtcgttatagtgatcaagtaaagttgtacaattttggataatcgaa 3230524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 231 - 364
Target Start/End: Original strand, 913948 - 914082
Alignment:
Q  231 aaagtcgttatagtgatcaagtaaggttctacaattttggatgatcgaaccatactcagagagattcatcttactgttgtgcacatcatccacaaccatt 330  Q
    ||||||||| |||||||||||||| |||  |||||||||||| ||||||||||| ||| ||||||| |||| | |||||||||||||||| |||||||||    
T  913948 aaagtcgttgtagtgatcaagtaaagttgcacaattttggataatcgaaccatattcaaagagattaatctaattgttgtgcacatcatctacaaccatt 914047  T
Q  331 tt-caatcaagcttaaaaatcacattgtggtatcc 364  Q
    || ||||| | || ||||||||  || ||||||||    
T  914048 ttacaatccaactcaaaaatcatcttttggtatcc 914082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 11737762 - 11737801
Alignment:
Q  182 caagagcatgggcgctaccgtttgcttgacgcctagtaaa 221  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  11737762 caagagcatgagcgcttccgtttgcttgacgcctagtaaa 11737801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 9680402 - 9680275
Alignment:
Q  101 tttcattcataataatagtagcaatataaaaagcaattacatcaaaagtactgcgtgaaaaatgggataagacatctcgtgcaagagcatgggcgctacc 200  Q
    ||||||| | |||||||||||||||||||   | ||||||||||||| |||||| ||||  ||| |||||     ||  |||||||||||| ||||| ||    
T  9680402 tttcattaaaaataatagtagcaatataacttggaattacatcaaaaatactgcttgaagcatgagataaagttgcttttgcaagagcatgagcgcttcc 9680303  T
Q  201 gtttgcttgacgcctagtaaaaacaact 228  Q
    ||||||||||||||||||||| ||||||    
T  9680302 gtttgcttgacgcctagtaaacacaact 9680275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 41687233 - 41687281
Alignment:
Q  180 tgcaagagcatgggcgctaccgtttgcttgacgcctagtaaaaacaact 228  Q
    |||||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  41687233 tgcaagagcatgagcgcttccgtttgcttgacgcctagtaaacacaact 41687281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 34323423 - 34323469
Alignment:
Q  2 ggtaagattgtattttttgtattcattaagtttcataattagagaat 48  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  34323423 ggtaagattgtatttttggtacacattaagtttcataattagagaat 34323469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 23081454 - 23081410
Alignment:
Q  3 gtaagattgtattttttgtattcattaagtttcataattagagaa 47  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||    
T  23081454 gtaagattgtattttttgtagtcattaactttcataactagagaa 23081410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 21265971 - 21265929
Alignment:
Q  2 ggtaagattgtattttttgtattcattaagtttcataattaga 44  Q
    ||||||||||||||||| |||  ||||||||||||||||||||    
T  21265971 ggtaagattgtatttttggtagacattaagtttcataattaga 21265929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 47244846 - 47244911
Alignment:
Q  85 aagcaaatttaagatgtttcattcataataatagtagcaatataaaaagcaattacatcaaaagta 150  Q
    ||||||| ||||| ||||||||||||||||||||||||| || || ||  |||| |||||||||||    
T  47244846 aagcaaacttaaggtgtttcattcataataatagtagcagtacaagaaagaattgcatcaaaagta 47244911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 47244673 - 47244711
Alignment:
Q  85 aagcaaatttaagatgtttcattcataataatagtagca 123  Q
    ||||||| ||||| |||||||||||||||||||||||||    
T  47244673 aagcaaacttaaggtgtttcattcataataatagtagca 47244711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 416 - 466
Target Start/End: Complemental strand, 4514 - 4464
Alignment:
Q  416 cgctattgtaatcacaacctcataataagttgtcaaagctgcaacaaatgt 466  Q
    ||||||||| |||||||||||  |||||||||| ||||| |||||||||||    
T  4514 cgctattgtcatcacaacctcgcaataagttgttaaagcagcaacaaatgt 4464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 14835587 - 14835621
Alignment:
Q  178 cgtgcaagagcatgggcgctaccgtttgcttgacg 212  Q
    |||||||||||||||||||| ||||||||||||||    
T  14835587 cgtgcaagagcatgggcgcttccgtttgcttgacg 14835621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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