View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2034_low_5 (Length: 466)
Name: NF2034_low_5
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_low_5 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (3 HSPs) |
| | |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 411
Target Start/End: Complemental strand, 16986715 - 16986317
Alignment:
| Q |
13 |
acttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16986715 |
acttgaaactttcctcttgtgacatcacaactttgcctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgtttttttatc |
16986616 |
T |
|
| Q |
113 |
tacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagtta |
212 |
Q |
| |
|
|| |||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| || ||||| |
|
|
| T |
16986615 |
tagttttcccaaacaatttacaaaattgaaggaccttcgacatctcatgattaaagattgcccgtcattgatatcaactccttttagaattagggagtta |
16986516 |
T |
|
| Q |
213 |
acttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattg |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16986515 |
acttgtttgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctatacatca |
16986416 |
T |
|
| Q |
313 |
aaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatgatg |
411 |
Q |
| |
|
|||| |||||||||||| | || |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16986415 |
aaggccttgagaatgtgtcaaataaagaggatgctaaagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggtgatgatg |
16986317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 111 - 403
Target Start/End: Original strand, 16868989 - 16869281
Alignment:
| Q |
111 |
tctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagt |
210 |
Q |
| |
|
|||| ||||||||||||||| | ||||| ||||||||||||||||||||||| || |||| || ||||||| |||||||||||| |||||||| ||| |
|
|
| T |
16868989 |
tctagttttcccaaacaattcaaaaaattgcaggaccttcgacatctcatgattgaagattgtccatcattgaaatcaactcctttcagaattggagagt |
16869088 |
T |
|
| Q |
211 |
taacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacat |
310 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
16869089 |
taactagtctgcaaacattgaccaatttcatggttggttcaaaaactgggtttggtttagcagagctacacaagttacaattaggaggcaagctatacat |
16869188 |
T |
|
| Q |
311 |
tgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16869189 |
caaaggtcttgagaatgtgtcgaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatcgcttatatttgtcatgggg |
16869281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 36 - 408
Target Start/End: Complemental strand, 16796401 - 16796029
Alignment:
| Q |
36 |
atcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcag |
135 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||| |||||||| ||||||||| |||| |||| ||||||||||||||| | |
|
|
| T |
16796401 |
atcacaaccttgcctgcgtctgtttgtagactgcagaaattgcaaacacttaaacttgaacattgctattttttctctagttttcccaaacaattcaaaa |
16796302 |
T |
|
| Q |
136 |
aattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaa |
235 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| |||| || ||||||| |||||||||||||||||||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
16796301 |
aattgcaggaccttcgacatctcataattaaagattgtccatcattgaaatcaactccttttagaattggggagttatctagtctgcaaacattgaccaa |
16796202 |
T |
|
| Q |
236 |
tttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaac |
335 |
Q |
| |
|
||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| || |
|
|
| T |
16796201 |
tttcatagttgattcaaaaactgggtttggtttagcagagctacacaacttacaattaggaggcaggctatacatcaaaggccttgagaatgtgttaaat |
16796102 |
T |
|
| Q |
336 |
gaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatg |
408 |
Q |
| |
|
|| || ||||||||| |||||||||||||||| ||||| ||||||||| | |||||||||||||||| |||| |
|
|
| T |
16796101 |
gaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcacctatatttgtcatggggtgatg |
16796029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 110 - 402
Target Start/End: Complemental strand, 16657176 - 16656884
Alignment:
| Q |
110 |
atctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcag |
209 |
Q |
| |
|
||||| |||||| |||||||| || ||||| ||||||||||||||||||| ||||||| ||| || ||||||| |||||||||||||| ||||||| || |
|
|
| T |
16657176 |
atctagttttccaaaacaattcacaaaattgcaggaccttcgacatctcattattaaaagttgtccatcattgaaatcaactccttttaaaattggggag |
16657077 |
T |
|
| Q |
210 |
ttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagaca |
309 |
Q |
| |
|
|||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
16657076 |
ttaactagtctccaaacattgaactatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctataca |
16656977 |
T |
|
| Q |
310 |
ttgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggg |
402 |
Q |
| |
|
| |||| |||||||||||| | | || || ||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
16656976 |
tcaaaggccttgagaatgtgtcaattgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatggg |
16656884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 136 - 446
Target Start/End: Complemental strand, 17068641 - 17068324
Alignment:
| Q |
136 |
aattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaa |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||| | ||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
17068641 |
aattgcaggaccttcgacatctcatgattaaagattgtcaatcattgaaatcaagtccttttagaattggggagttaactagtctgaaaacattgaccaa |
17068542 |
T |
|
| Q |
236 |
tttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaac |
335 |
Q |
| |
|
||||||||||| || | ||||||| | |||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||| |||||||| | || |
|
|
| T |
17068541 |
tttcatagttgattcaaaaactggttatggtttagcagagctacaaaacttacaattaggaggcaagctacacatcaaaggccttcagaatgtgtcgaaa |
17068442 |
T |
|
| Q |
336 |
gaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggggcgatgatgtgaattcaa-------cggtgttg |
428 |
Q |
| |
|
||||| ||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||||||| |
|
|
| T |
17068441 |
gaagaggatgctaaaaaagctaatttgaatggcaagaaggacttaaatagcttatatttgtcatggggtgatgaagctaattcaaaagttggcggtgttg |
17068342 |
T |
|
| Q |
429 |
atgctgagcgagtactgg |
446 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17068341 |
atgctgagcgagtactgg |
17068324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 35 - 403
Target Start/End: Complemental strand, 16787206 - 16786838
Alignment:
| Q |
35 |
catcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgca |
134 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||| | |||||| |||||||| | |
|
|
| T |
16787206 |
catcacaatcttaccaggttctgtttgtagactgcagaaattgcaaacactaaaacttgaacgttgtcattttctatccagttttcctaaacaattgata |
16787107 |
T |
|
| Q |
135 |
gaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgacca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||| |||| |||||||||||||||| | ||| |
|
|
| T |
16787106 |
gaattgaaggaccttcgacatctcatgattaaaaattgccattcattgatgtcatctccttttaaaattgggaagttcacttgtctgaaaacatggtcca |
16787007 |
T |
|
| Q |
235 |
atttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaa |
334 |
Q |
| |
|
|||||| |||| || | ||||||| | ||||||||| |||||| |||| || |||||||||| || ||| |||| ||| ||||||||||| | || |
|
|
| T |
16787006 |
ttttcattgttgattcaaaaactggttatggtttagccgagctatgcaacctataattaggaggaaatctacacatcaaagtccttgagaatgtatcgaa |
16786907 |
T |
|
| Q |
335 |
cgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16786906 |
tgaagagcatgctagagacgctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
16786838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 54 - 403
Target Start/End: Complemental strand, 16780395 - 16780045
Alignment:
| Q |
54 |
tctgtttgtagactgc-agaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggaccttcga |
152 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| |||||||||| ||||| |||| |||||| |||||||| || ||||| | |||||| || |
|
|
| T |
16780395 |
tctgtttgtagattgccagaaattgcaaacacttaaacttgaaggttgtgattatctttctagttttccgaaacaattgacacaattgcatgaccttaga |
16780296 |
T |
|
| Q |
153 |
catctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttag |
252 |
Q |
| |
|
||||| | |||| ||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||| | |
|
|
| T |
16780295 |
catcttgttattattgcttgccagagattgacatcaactccttttagaattggggagttaacttgtctgaaaacattgactactttcattgttggttcaa |
16780196 |
T |
|
| Q |
253 |
aaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagaga |
352 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||| ||| |||| ||| || ||||| ||||| ||| | |
|
|
| T |
16780195 |
aaaatgggtttggtttagcagagctacacaacttgcaattaggaggcaagctacacatcaaaggccttcagaaagtgttgaatgaagaggatgcaagaaa |
16780096 |
T |
|
| Q |
353 |
agctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16780095 |
agctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
16780045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 259 - 403
Target Start/End: Original strand, 18807348 - 18807492
Alignment:
| Q |
259 |
ggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaa |
358 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||||||||||||| |||| ||| ||||||||||| ||| ||| ||||||| ||||||||| |
|
|
| T |
18807348 |
ggtttggtttagcagagttacatgacttacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaa |
18807447 |
T |
|
| Q |
359 |
tttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
||||||||| || ||||| |||||| |||| || |||||||||| |
|
|
| T |
18807448 |
tttgattggtaaaaaggagttaaattgcttgtacctgtcatgggg |
18807492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 367
Target Start/End: Complemental strand, 16842885 - 16842710
Alignment:
| Q |
192 |
ccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaat |
291 |
Q |
| |
|
||||||| ||||||| ||||||| ||||| |||||||| || |||||| || ||| ||| ||||||||||||||||||||||||| |||||| || |
|
|
| T |
16842885 |
ccttttaaaattggggggttaactcatctgagaacattgagcattttcattgtacgttcagaggctgggtttggtttagcagagctacataacttagaac |
16842786 |
T |
|
| Q |
292 |
taggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattgg |
367 |
Q |
| |
|
|| ||||||| ||| |||| |||| ||||| |||||| | || ||| ||||||||||||||||| || ||||| |
|
|
| T |
16842785 |
taagaggcaaactacacatcaaaggccttgaaaatgtgacgaatgaaagggatgctagagaagctaagttaattgg |
16842710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 403
Target Start/End: Original strand, 18874344 - 18874489
Alignment:
| Q |
258 |
gggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagcta |
357 |
Q |
| |
|
||||||||||||||| || |||| || ||||| |||||||||||||| |||| ||| ||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
18874344 |
gggtttggtttagcacagttacatgacctacaactaggaggcaagctacacatcagaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
18874443 |
T |
|
| Q |
358 |
atttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || |||||||||| |
|
|
| T |
18874444 |
atttgattggtaaaaaggagttaaatcgcttgtacctgtcatgggg |
18874489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 403
Target Start/End: Complemental strand, 12113 - 11723
Alignment:
| Q |
13 |
acttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatc |
112 |
Q |
| |
|
||||| ||||||| ||||||||| ||| || || |||||||||||||| ||||| |||||||| |||||||||||||||||| | ||| ||| |
|
|
| T |
12113 |
acttggaactttcatcttgtgacttcattaccttgcctggttctgtttgcagactacagaaattgcaaacactaaaacttgaaaaatgtcatcatctatc |
12014 |
T |
|
| Q |
113 |
tacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagtta |
212 |
Q |
| |
|
| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| |
|
|
| T |
12013 |
tgattttcccaaacaatttacaaaattgaaggaccttcgacatctcatgattaaaaattgcagttcattgaaatcaactccttttaaaattggggagtta |
11914 |
T |
|
| Q |
213 |
acttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattg |
312 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11913 |
acttgtctgaaaacattgaccattttcattgttggttcaaaaactgggtttggtttagcagagctacacaacttacaattaggaggaaagctacacatta |
11814 |
T |
|
| Q |
313 |
aaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||| ||| |||| ||| | | ||||| ||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11813 |
aaggccttcagaaagtgtcgattgaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
11723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 34 - 403
Target Start/End: Complemental strand, 7720 - 7351
Alignment:
| Q |
34 |
acatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgc |
133 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||||||||||||||| | |
|
|
| T |
7720 |
acatcacaaccttgcctgggtctgtttgtagactgcagaaattgcaaacactaaaacttgaacgttgccatttgctatctagttttcccaaacaatttac |
7621 |
T |
|
| Q |
134 |
agaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgacc |
233 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
7620 |
aaaattgaaggaccttcgacatctcatgattaaaaattgccattcattgatatcagctccttttagaattgggcagttaactagcctgaaaacattgacg |
7521 |
T |
|
| Q |
234 |
aatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgccta |
333 |
Q |
| |
|
| |||||| ||||||| | ||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||| || |||||||||||||| | | |
|
|
| T |
7520 |
attttcattgttggttcaaaaactgggtatggtttagcacagctacacaacttacagttaggaggcaagctacacatcaaatgtcttgagaatgtgtcga |
7421 |
T |
|
| Q |
334 |
acgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| | ||||||||||| || | ||||||||||| ||||| |
|
|
| T |
7420 |
acgaagaggatgctagagaaactaatttgattagcaagaaggacttggatcgtttatatttgtcttgggg |
7351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 54 - 403
Target Start/End: Complemental strand, 17272 - 16923
Alignment:
| Q |
54 |
tctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggaccttcgac |
153 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||| ||||| |||| |||||| |||||||| || ||||| | |||||| ||| |
|
|
| T |
17272 |
tctgtttgtagactgcagaaattgcaaacacttaaacttgaaggttgtgatattctttctagttttccgaaacaattgacacaattgcatgaccttagac |
17173 |
T |
|
| Q |
154 |
atctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttaga |
253 |
Q |
| |
|
|||| | |||| ||||| ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||| | | |
|
|
| T |
17172 |
atcttgttattattgcttgccggagattgacatctactcctttcagaattggggagttaacttgtctgaaaacattgaccactttcattgttggttcaaa |
17073 |
T |
|
| Q |
254 |
aactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaa |
353 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| |||| ||| | || ||||| ||||| | | || |
|
|
| T |
17072 |
aactgggtttggtttagtagagctacacaacttacaattaggaggcaagctacacatcaaaggccttcagaaagtgtcgaatgaagaggatgcaaaacaa |
16973 |
T |
|
| Q |
354 |
gctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
16972 |
gctaatttgattggcaagaaggacttaaatcgcttatatttgtcttgggg |
16923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 110 - 400
Target Start/End: Complemental strand, 35228 - 34938
Alignment:
| Q |
110 |
atctacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcag |
209 |
Q |
| |
|
||||| ||||||||||||||| | ||||| || |||||||||||||| ||||||||| ||| || |||||| ||||||||||||||||||||||| || |
|
|
| T |
35228 |
atctagttttcccaaacaattcaccaaattgcagaaccttcgacatctcgtgattaaaacttgtccgtcattgctatcaactccttttagaattggggag |
35129 |
T |
|
| Q |
210 |
ttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagaca |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
35128 |
ttaacttgtttgaaaacattgaccaatttcatagttggttcagaaactgagtttggtttagcagagctacacaacttacaattaggaggcaagctataca |
35029 |
T |
|
| Q |
310 |
ttgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatg |
400 |
Q |
| |
|
| | || |||||||||||| | | || || ||||||||| |||| ||||||||||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
35028 |
tcaatggccttgagaatgtgtcggatgaggaggatgctagaaaagcaaatttgattggcaagaaagacttaaatcgcttatatttgtcatg |
34938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 31 - 402
Target Start/End: Complemental strand, 36733 - 36362
Alignment:
| Q |
31 |
gtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatt |
130 |
Q |
| |
|
|||| |||||||| || |||| |||||||||| ||| || ||||| |||||||| |||||| || |||| ||||| |||||||||| ||| |
|
|
| T |
36733 |
gtgatatcacaaccttgcctgcgtctgtttgtaaactacaaaaattgcaaacacttaaacttcgaggttgttgttttttatctagttttcccaaaacatt |
36634 |
T |
|
| Q |
131 |
tgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattg |
230 |
Q |
| |
|
|| ||||| ||||||||||||||||||| ||| || |||| || ||||||| |||||||||||||| ||||||| |||||||| |||| |||||||| |
|
|
| T |
36633 |
cacaaaattgcaggaccttcgacatctcattattgaagattgtccatcattgaaatcaactccttttaaaattggggagttaactagtctccaaacattg |
36534 |
T |
|
| Q |
231 |
accaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgc |
330 |
Q |
| |
|
|||||||||||||||| || | ||| ||| ||| |||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||||||| |
|
|
| T |
36533 |
accaatttcatagttgattcaaaaattggttttcgtttagcagagctacacaacttacaattaggaggcaagttatacatcaaaggccttgagaatgtgt |
36434 |
T |
|
| Q |
331 |
ctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatggg |
402 |
Q |
| |
|
| || || || ||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||| |
|
|
| T |
36433 |
caaatgaggaggatgctagaaaagctaatttgattggcaagaaagacttaaatcgcttatatttgtcatggg |
36362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 391
Target Start/End: Original strand, 2892 - 3075
Alignment:
| Q |
208 |
agttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctaga |
307 |
Q |
| |
|
||||||||||||| |||||||||| || |||||| || |||| | | ||||| |||||||||||| ||| ||||||||||||||||||||||| | |
|
|
| T |
2892 |
agttaacttgtctaaaaacattgagcactttcatcgtgggttcgaagatggggttcggtttagcagagttacgtgacttacaattaggaggcaagctaca |
2991 |
T |
|
| Q |
308 |
cattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttata |
391 |
Q |
| |
|
||| |||| |||||||||||| | | ||| ||||||| |||||||||||||||||| || ||||| || ||| ||||||| |
|
|
| T |
2992 |
catcaaaggccttgagaatgtgtcaagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttgaatcgcttata |
3075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 403
Target Start/End: Original strand, 38940256 - 38940646
Alignment:
| Q |
13 |
acttgaaactttcctcttgtgacatcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatc |
112 |
Q |
| |
|
||||| |||||| |||| |||| |||||||| || |||| ||||||||||| |||| |||||| ||||||||||||||||||| |||| || |
|
|
| T |
38940256 |
acttggaacttttctctagtgatatcacaaccttgcctgtgtctgtttgtaggctgctgaaattgcaaacactaaaacttgaaggttgtaattatctttc |
38940355 |
T |
|
| Q |
113 |
tacttttcccaaacaatttgcagaattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagtta |
212 |
Q |
| |
|
|| ||||||||||||||| || || || || |||||| ||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
38940356 |
tagttttcccaaacaattgacaaaactgcagaaccttcaacatctcatgattaaaaattgtcgatcattgaaatcaactccttttagaattggggagtta |
38940455 |
T |
|
| Q |
213 |
acttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattg |
312 |
Q |
| |
|
|||||| |||||| |||||||| |||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
38940456 |
acttgtttgaaaaaattgaccattttcattgttggttcaaaaactggttttggtttagcagagctacacaacttacaattaggaggcaagctacatatca |
38940555 |
T |
|
| Q |
313 |
aaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||| ||| | || || | || |||| ||||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38940556 |
aaggccttcaaaaagtctcgaataaagaggatgcaagaaaagctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
38940646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 36 - 392
Target Start/End: Original strand, 7054192 - 7054548
Alignment:
| Q |
36 |
atcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcag |
135 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||| || ||||||||||||||| |||| || ||| ||| ||||||||||| | |
|
|
| T |
7054192 |
atcacaaccttgcctgggtctgtttgtagactgcagaagttgcaaacactaaaacttaaagactgcccttatttttctcatttccccaaacaattgacgc |
7054291 |
T |
|
| Q |
136 |
aattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaa |
235 |
Q |
| |
|
||||| | || ||| ||||| || ||||| ||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7054292 |
aattgcaagaacttagacatatcgtgattgaaaattgtttttcattagtatcaactccctttagaattggggagttaacttgtctgaaaacattgaccgt |
7054391 |
T |
|
| Q |
236 |
tttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaac |
335 |
Q |
| |
|
|||||| ||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| ||| |||||||||||| | ||| |
|
|
| T |
7054392 |
tttcattgttggatcaaaaactgggtttggtttagcagagttacacaacttacaattaggaggcatgcttcacatcagaggccttgagaatgtgtccaac |
7054491 |
T |
|
| Q |
336 |
gaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatat |
392 |
Q |
| |
|
|| | |||||||||||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
7054492 |
gacggggatgctagagaagctaatttgattggcaataaggacttaaatcgcttatat |
7054548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 54 - 403
Target Start/End: Complemental strand, 8377 - 8028
Alignment:
| Q |
54 |
tctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggaccttcgac |
153 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| ||||||||| ||||| |||| |||||| |||||||| || || | ||||||||| || |
|
|
| T |
8377 |
tctgtttgtaaactgcagaaattgcaaacacttaaacttgaatattgtcttcatctttctagttttccaaaacaattgacaaaactacaggaccttcaac |
8278 |
T |
|
| Q |
154 |
atctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttaga |
253 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||| |||||| |||||||| |||||| ||||||| | | |
|
|
| T |
8277 |
atctcatgattaaaaattgcatatcattgaaatcaactccttttagaattggggagttaacttgtttgaaaaaattgaccattttcattgttggttcaaa |
8178 |
T |
|
| Q |
254 |
aactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaa |
353 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| || | ||| | || ||| | || ||||| ||||| ||| || |
|
|
| T |
8177 |
aactgggtatggtttagcagagctacaaaacttacaattaggaggcaagctacacatcaaacgccttcacaaagtgtcaaatgaagaggatgcaagaaaa |
8078 |
T |
|
| Q |
354 |
gctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8077 |
gctaatttgattggcaagaaggacttaaatcgcttatatttgtcatgggg |
8028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 36 - 403
Target Start/End: Complemental strand, 13377327 - 13376960
Alignment:
| Q |
36 |
atcacaactttacctggttctgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcag |
135 |
Q |
| |
|
|||||||| || |||| |||||||| || ||||||||||| ||||| ||||||||||| ||||| |||| |||||| ||| ||||| || |
|
|
| T |
13377327 |
atcacaaccttgcctgagtctgtttgcaggctgcagaaattgcaaaccttaaaacttgaacgttgtgattctctttctagttttccaaaaaaatttacac |
13377228 |
T |
|
| Q |
136 |
aattgaaggaccttcgacatctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaa |
235 |
Q |
| |
|
||||| | |||||| ||||||| || |||||| |||||| |||||| |||||| ||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
13377227 |
aattggaagaccttagacatcttattattaaagattgccagtcattggtatcaagtccatttagaatcagggagttaacttgtctgaaaacattgaccat |
13377128 |
T |
|
| Q |
236 |
tttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaac |
335 |
Q |
| |
|
|||||| ||||| | |||| ||||||||||||||| ||||| || ||||||||||||||||| || ||| |||| ||| ||| |||||||| | ||| |
|
|
| T |
13377127 |
tttcattgttggctcggaaattgggtttggtttagctgagctgcaaaacttacaattaggaggaaaactacacatcagaggccttcagaatgtgtcaaac |
13377028 |
T |
|
| Q |
336 |
gaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13377027 |
gaaggggatgctaaagaagctaatttgattggaaagaaagacttaaatcacttatatttgtcatgggg |
13376960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 56 - 400
Target Start/End: Complemental strand, 20153659 - 20153317
Alignment:
| Q |
56 |
tgtttgtagactgcagaaattacaaacactaaaacttgaagattgtgnnnnnnnatctacttttcccaaacaatttgcagaattgaaggaccttcgacat |
155 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| ||||| | || ||| ||||||||||| | ||||| |||||||||||||| |
|
|
| T |
20153659 |
tgtttgtagactgcagaagttgcaaacactaaaacttgaaaattgttattttttacgtagtttccccaaacaattgacgaaattgcaggaccttcgacat |
20153560 |
T |
|
| Q |
156 |
ctcatgattaaaaattgcccttcattgatatcaactccttttagaattgggcagttaacttgtctgaaaacattgaccaatttcatagttggtttagaaa |
255 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| | ||| |
|
|
| T |
20153559 |
ctcatgattaaaaattgcctatcattcatattaactccttttagaattggggagttaacttgtctgaaaacattgaccactttcattgttggttcaaaaa |
20153460 |
T |
|
| Q |
256 |
ctgggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagc |
355 |
Q |
| |
|
|| ||| |||||||| ||||||| |||| |||||||||||||| |||||| |||| || | || |||||||| | || ||||| ||||||||| || |
|
|
| T |
20153459 |
ct-ggtatggtttagaagagctaaacaagttacaattaggaggaaagctatacatcaaaagcctcaagaatgtgtcaaatgaagagtatgctagaggaga |
20153361 |
T |
|
| Q |
356 |
taatttgattggaaagaaggacttaaatagcttatatttgtcatg |
400 |
Q |
| |
|
|||||||||| | ||| ||||| |||| ||||||||||||||| |
|
|
| T |
20153360 |
taatttgattagcaag-aggacataaaacacttatatttgtcatg |
20153317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 403
Target Start/End: Complemental strand, 8410 - 8215
Alignment:
| Q |
208 |
agttaacttgtctgaaaacattgaccaatttcatagttggtttagaaactgggtttggtttagcagagctacacaacttacaattaggaggcaagctaga |
307 |
Q |
| |
|
||||||||||||| ||||| || | || |||||| || ||||| | | |||||||||||||||||| |||| |||||||| |||||||||||||| | |
|
|
| T |
8410 |
agttaacttgtctcaaaactttaagcactttcattgtgggtttgaaggcggggtttggtttagcagagttacatgacttacaactaggaggcaagctaca |
8311 |
T |
|
| Q |
308 |
cattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagctaatttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
||| ||| ||||||||||| ||| ||| ||||||| |||||||||||||||||| || ||||| |||||| |||| || ||||||||||| |
|
|
| T |
8310 |
catcagaggccttgagaatgtatctagtgaatgggatgctaaagaagctaatttgattggtaaaaaggagttaaatcgcttgtacttgtcatgggg |
8215 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 403
Target Start/End: Complemental strand, 3679 - 3534
Alignment:
| Q |
258 |
gggtttggtttagcagagctacacaacttacaattaggaggcaagctagacattgaaggtcttgagaatgtgcctaacgaagatgatgctagagaagcta |
357 |
Q |
| |
|
|||||||||||||||||| || | |||||||| ||||||||| |||| |||| |||| ||||||||||| ||| ||| ||||||| |||||||| |
|
|
| T |
3679 |
gggtttggtttagcagagttaaatgacttacaactaggaggcaggctacacatcaaaggccttgagaatgtatctagtgaatgggatgctaaagaagcta |
3580 |
T |
|
| Q |
358 |
atttgattggaaagaaggacttaaatagcttatatttgtcatgggg |
403 |
Q |
| |
|
|||||||||| || ||||| |||||| |||| || ||||||||||| |
|
|
| T |
3579 |
atttgattggtaaaaaggagttaaatcgcttgtacttgtcatgggg |
3534 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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