View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2034_low_8 (Length: 339)
Name: NF2034_low_8
Description: NF2034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2034_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 220
Target Start/End: Complemental strand, 4154028 - 4153818
Alignment:
| Q |
11 |
cacagacgcaagaatttattattttcacagtacctatttgtctgatcctggaaaatgactcataattattacggttaaaagtttacttaacatcagaaat |
110 |
Q |
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| T |
4154028 |
cacagacgcaagaatttattattttcacagtacctatttgtctgatcctggaaaatgactcataattattacggttaaaagtttacttaacatcagaaat |
4153929 |
T |
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| Q |
111 |
atgatctcatgcaatgcaaccctggcactgaactgaacacgaaaattctcacgaaaagagttgaataagtactaaggttgaaatttggt-caataaagta |
209 |
Q |
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| T |
4153928 |
atgatctcatgcaatgcaaccctggcactgaactgaacacgaaaattctcacgaaaagagttgaataagtaccaaggttgaaatttggtccaaaaatgta |
4153829 |
T |
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| Q |
210 |
caagggtagaa |
220 |
Q |
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| T |
4153828 |
caagggtagaa |
4153818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 190 - 323
Target Start/End: Complemental strand, 4153820 - 4153687
Alignment:
| Q |
190 |
gaaatttggtcaataaagtacaagggtagaacccctnnnnnnngtacaaggatagaaattcaattcacttatatgtaaacttcgatatatttacattttt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153820 |
gaaatttggtcaataaagtacaagggtagaacccctaaaaaaagtacaaggatagaaattcaattcacttatatgtaaacttcgatatatttacattttt |
4153721 |
T |
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| Q |
290 |
aataattttctatatgtaataaatgtatcaattt |
323 |
Q |
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| T |
4153720 |
aataattttctatatgtaataaatgtatcaattt |
4153687 |
T |
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