View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20350_high_4 (Length: 259)
Name: NF20350_high_4
Description: NF20350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20350_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 37771919 - 37772166
Alignment:
| Q |
1 |
tataaatgcaaataatcaagagataatatgccaacgtgacttttaagaggcctaagtgtaccatcctcattgatggcataggcatgtttggatcctctac |
100 |
Q |
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| T |
37771919 |
tataaatgcaaataatcaagagataatatgccaacgtgacttttaagaggcctaagtgtaccatcctcattgatggcataggcatgtttggatcctctac |
37772018 |
T |
|
| Q |
101 |
atcatactgcacaagagttttcaaagtcttagagggtcatgggcagaactattcacatcgtgtttgttgtttgcttcatccctctggattttgttctacc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37772019 |
atcatactgcacaggagttttcaaagtcttagagggtcatgggcagaactattcacatcgtgtttgttgtttgcttcatccctctggattttgttctacc |
37772118 |
T |
|
| Q |
201 |
tctaattctctaaaacacacaaacctccaaaatcattattgactctgt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37772119 |
tctaattctctaaaacacacaaacctccaaaatcattattgactctgt |
37772166 |
T |
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