View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20350_high_5 (Length: 252)
Name: NF20350_high_5
Description: NF20350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20350_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 35831278 - 35831525
Alignment:
| Q |
5 |
tccaagaatatccatagctctacgggtggcgagatactcatgagcatcatttacgtcagccagttcatagcattgtgactggttaaggtagtgaaacgat |
104 |
Q |
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| T |
35831278 |
tccaacaatacccatagctctacgggtggcgagatactcatgagcatcatttacatcagccagttcatagcattgtgactggttaaggtagtgaaacgat |
35831377 |
T |
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| Q |
105 |
ttaggatttcctaatttgtatttctcaatttcctgtcggcagaacttggatgagcttacataattgaatgaatcaaacaaaaagtagattgtagacggag |
204 |
Q |
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| T |
35831378 |
ttaggatttcctaatttgtatttctcaatttcctgtcggcagaacttggatgagcttacataattgaatgaatcaaacaaaaagtagattgtagacggag |
35831477 |
T |
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| Q |
205 |
agctacctcctgtggtgcggcgcaaagaagataaaagcagtggtagtt |
252 |
Q |
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| T |
35831478 |
agctacctcctgtggtgcggcgcaaagaagataaaagcagtggtagtt |
35831525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 47694585 - 47694456
Alignment:
| Q |
12 |
atatccatagctctacgggtggcgagatactcatgagcatcatttacgtcagccagttcatagcattgtgactggttaaggtagtgaaacgatttaggat |
111 |
Q |
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|||||||||||||| | |||||| ||||||||| ||||||| ||| ||||||| ||||||||||| |||||||||||||||||| | | |||||||| |
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| T |
47694585 |
atatccatagctctcctggtggcaagatactcacgagcatcgcttatatcagccaattcatagcatttcgactggttaaggtagtgatatgttttaggat |
47694486 |
T |
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| Q |
112 |
ttcctaatttgtatttctcaatttcctgtc |
141 |
Q |
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| T |
47694485 |
gtcctaatttgtatttctcgatttcctgtc |
47694456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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