View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20350_low_1 (Length: 492)
Name: NF20350_low_1
Description: NF20350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20350_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 156 - 474
Target Start/End: Original strand, 7141214 - 7141532
Alignment:
| Q |
156 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa |
255 |
Q |
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| T |
7141214 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatattattgaa |
7141313 |
T |
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| Q |
256 |
ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat |
355 |
Q |
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| T |
7141314 |
ttctatacatgttcttctataatttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaat |
7141413 |
T |
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| Q |
356 |
ccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagt |
455 |
Q |
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| T |
7141414 |
ccaagagtgagggagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagt |
7141513 |
T |
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| Q |
456 |
tagtgatcaaagaaacatt |
474 |
Q |
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| T |
7141514 |
tagtgatcaaagaaacatt |
7141532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 7141087 - 7141216
Alignment:
| Q |
1 |
caagagtgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagct |
100 |
Q |
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| T |
7141087 |
caagagtgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagct |
7141186 |
T |
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| Q |
101 |
gtgatttgggttagtaacacttaacttata |
130 |
Q |
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| T |
7141187 |
gtgatttgggttagtaacacttaacttata |
7141216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 277 - 472
Target Start/End: Original strand, 7154105 - 7154300
Alignment:
| Q |
277 |
atttcaggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggca |
376 |
Q |
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| T |
7154105 |
atttcaggacgtatttgttgccggaactgatacaacatcgacaacaatagagtgggctatgtcagaaatgatgaaaaatccaagtgtgagagaaaaagca |
7154204 |
T |
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| Q |
377 |
caagctgaattaagacaagcattcaatggtaaggaactaatatatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaaca |
472 |
Q |
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| T |
7154205 |
caagctgaactaagagaagcattcaaaggaaagaaaataatatctgaatctgatctaaatgaactaacttactttaagttagtgatcaaagaaaca |
7154300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 7152924 - 7153046
Alignment:
| Q |
7 |
tgaaattgagaaggaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgatt |
106 |
Q |
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|||| |||| || ||||||||| | |||||||||||| ||||||||||||||| | ||||||| || || | |||| |||||||||||||||||||||| |
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| T |
7152924 |
tgaagttgataacgaagatcttctagatgttcttttgcgagtccaacaaagtgataaccttgatatcaaaataacaaccaacaacatcaaagctgtgatt |
7153023 |
T |
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| Q |
107 |
tgggttagtaacacttaacttat |
129 |
Q |
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| T |
7153024 |
tgggttagttacaatgaacttat |
7153046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 7131652 - 7131732
Alignment:
| Q |
318 |
caacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcat |
398 |
Q |
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| T |
7131652 |
caacaatagtatgggccatgtcagaactgatgaaaaacccaagtgtgatgaacaaggcacaagctgaaataagagaagcat |
7131732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 7130752 - 7130839
Alignment:
| Q |
20 |
gaagatcttgtggatgttcttttgagagtccaacaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgattt |
107 |
Q |
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| T |
7130752 |
gaagatcttgttgatgtgcttttgagaatccaagaaagtggaagccttgaaatcccaataacaactagcaacatcaaagctgtgattt |
7130839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 319 - 471
Target Start/End: Complemental strand, 12425604 - 12425452
Alignment:
| Q |
319 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagcattcaatggtaaggaactaata |
418 |
Q |
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| T |
12425604 |
aacaatagagtgggctatgtcagagttaatgaaaaacccaagagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaata |
12425505 |
T |
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| Q |
419 |
tatgaaactgatgtagagaaactaagttacttaaagttagtgatcaaagaaac |
471 |
Q |
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| T |
12425504 |
tatgagagtgatctacataaacttgggtacttgaagttagtgatcaaagaaac |
12425452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 391
Target Start/End: Original strand, 12268081 - 12268153
Alignment:
| Q |
319 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaaga |
391 |
Q |
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| T |
12268081 |
aacaatagattgggctatgtcagagttaatgaaaaaccctagagtgaggatgaaagcacaagctgaaataaga |
12268153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 363
Target Start/End: Complemental strand, 12438728 - 12438646
Alignment:
| Q |
281 |
caggatgtatttgttgctggaactgatacatcatcgacaacaatagaatgggctatgtcagaaatgatgaaaaatccaagagt |
363 |
Q |
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| T |
12438728 |
caggatatattttttgctggaagtgggacatcagctacaactttagaatgggccttttcagaaatgttgaaaaatccaagagt |
12438646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 391
Target Start/End: Complemental strand, 55958833 - 55958761
Alignment:
| Q |
319 |
aacaatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaaga |
391 |
Q |
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| T |
55958833 |
aacaatagactgggcaatgtcagagttgatgaaaaacccaagagtgatgaagaaggcacaatctgaaataaga |
55958761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 396
Target Start/End: Complemental strand, 55955274 - 55955200
Alignment:
| Q |
322 |
aatagaatgggctatgtcagaaatgatgaaaaatccaagagtgaggaagaaggcacaagctgaattaagacaagc |
396 |
Q |
| |
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|||||| |||||||||||||| |||||||||| ||||||||| |||||| |||||| | ||| ||||| |||| |
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| T |
55955274 |
aatagagtgggctatgtcagagttgatgaaaaactcaagagtgatgaagaaagcacaatccgaaataagagaagc |
55955200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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