View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20350_low_2 (Length: 464)
Name: NF20350_low_2
Description: NF20350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20350_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Original strand, 26283115 - 26283549
Alignment:
| Q |
15 |
atcaaaagctattcctcaaagcaatcaaagaaactcttcagggaaaggtaagatgcaagaatccaacaatgatcaagtgaaattgaagcctttgcattgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26283115 |
atcaaaagctattcctcaaagcaatcaaagaaactcttcagggaaaggcatgatgcaagaatccaacaatgatcaagtgaaattgaagcctttgcattgg |
26283214 |
T |
|
| Q |
115 |
gataaagtgaacactaatgctgctgatcattccatggtttgggacaaagtcgatcgcggttcgttcaggtaaa-ccctaatatgttgaatgttgttaaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26283215 |
gataaagtgaacactaatgctgctgatcattccatggtttgggacaaagtcgatcgcggttcgttcaggtaaaaccctaatatgttgaatgttgttaaat |
26283314 |
T |
|
| Q |
214 |
aaatttagatattattttagtaattttcttcttcgtcgggatttgaacttgtgtttctaaattcatttctttagggttgatcaagatcttatggaagctc |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26283315 |
aaatttagttattattttagtaattttcttcttcatcgggaattgaacttgtgtttctaaattcatttctttagggttgatcaagatcttatggaagctc |
26283414 |
T |
|
| Q |
314 |
tctttggttatgttgcaacaaaccgaaaatcacctcagcaaaagactcattcaacaactccaagcaatgatgcctcaacaaatattttccttcttgatcc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26283415 |
tctttggttatgttgcaacaaaccgaaaatcacctcagcaaaagactcattcaacaactccaagcaatgatgcctcaacaaatattttccttcttgatcc |
26283514 |
T |
|
| Q |
414 |
tagaaaatcacagaacattgctattgtgttgaaat |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26283515 |
tagaaaatcacagaacattgctattgtgttgaaat |
26283549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 15944822 - 15944916
Alignment:
| Q |
89 |
aagtgaaattgaagcctttgcattgggataaagtgaacactaatgctgctgatcattccatggtttgggacaaagtcgatcgcggttcgttcaggtaa |
186 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||||| |||||| || |||||| |||||||| ||||||||| |||| |||||||| || |||||| |
|
|
| T |
15944822 |
aagtaaaattgaaaccattgcattgggataaggtgaatactaat-ct--tgatcactccatggtgtgggacaaaatcgaccgcggttcttttaggtaa |
15944916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 448
Target Start/End: Original strand, 15945084 - 15945168
Alignment:
| Q |
364 |
tcaacaactccaagcaatgatgcctcaacaaatattttccttcttgatcctagaaaatcacagaacattgctattgtgttgaaat |
448 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| ||| ||||||| |||||||||||||| |||| |||||| || ||||||| |
|
|
| T |
15945084 |
tcaacaagtccaagcagggatgcatcaacaaatgcttttattcttgaccctagaaaatcacaaaacactgctatagttttgaaat |
15945168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University