View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20350_low_3 (Length: 396)
Name: NF20350_low_3
Description: NF20350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20350_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 221 - 378
Target Start/End: Complemental strand, 15275225 - 15275066
Alignment:
| Q |
221 |
agtgtatttataacgtgagagttggaaggagaagataattgtataggaaacct--aggtttaggggaagtaggtacctgttttattatttacaagcagta |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15275225 |
agtgtatttataacgtgagagttggaaggagaagataattgtataggaaacctccaggtttaggggaagtaggtacctgttttattatttacaagcagta |
15275126 |
T |
|
| Q |
319 |
tctgctttacaatttgagtattcaagtatcattcctatctcgttggtaatttaacattcc |
378 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15275125 |
tctgctttacaatttgagtattcaagtattattcctatctcgttggtaatttaacattcc |
15275066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 15275427 - 15275291
Alignment:
| Q |
17 |
ggcgtatacggacatctgggggaaaagattaacatcttttagatcttttgcggaaataatgtcgagttctaaggttctgtacaccgtggtcatcatgcaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15275427 |
ggcgtatacggacatctgggagaaaagattaacatcttttagatcttttgcggaaataatgtcgagttctaaggttctgtacaccgtggtcatcatgcaa |
15275328 |
T |
|
| Q |
117 |
caaagagagaggaataaaagagagactttgtgtgttc |
153 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15275327 |
caaagagagaggaataaaagagagattttgtgtgttc |
15275291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 15263795 - 15263686
Alignment:
| Q |
17 |
ggcgtatacggacatctgggggaaaagattaacatcttttagatcttttgcggaaataatgtcgagttctaaggttctgtacaccgtggtcatcatgcaa |
116 |
Q |
| |
|
||||||||| || || || ||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15263795 |
ggcgtatacagatatttgtgggaaaatattaacatctttgagatcttttgcggaaatcatgttgagttctaaggttctgtacacggtggtcatcatgcaa |
15263696 |
T |
|
| Q |
117 |
caaagagaga |
126 |
Q |
| |
|
|| ||||||| |
|
|
| T |
15263695 |
cagagagaga |
15263686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 14431462 - 14431527
Alignment:
| Q |
29 |
catctgggggaaaagattaacatcttttagatcttttgcggaaataatgtcgagttctaaggttct |
94 |
Q |
| |
|
||||| || |||||||||||||| ||| |||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
14431462 |
catcttggagaaaagattaacatttttgagatctttagcggatatgatgttgagttctaaggttct |
14431527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University