View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20350_low_4 (Length: 327)
Name: NF20350_low_4
Description: NF20350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20350_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 26 - 322
Target Start/End: Original strand, 47605861 - 47606156
Alignment:
| Q |
26 |
tatacacacacacgcgcgtaggaaaattatcagtggaaaaacataaactctaattcacaacatcaaacaaagtaaaattaaaattcacaatcataatatt |
125 |
Q |
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| T |
47605861 |
tatacacacacgcgcgcgtaggaaaattatcagtggaaaaacataaactctaattcacaacatcaaacaaagtaaa-ttaaaattcacaatcataatatt |
47605959 |
T |
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| Q |
126 |
cttacaacttctgcacgtagaacctgagcctcttccttgcaaaacaaagtgagcaaaaacgtcaacaaaaaaggcgatttagtgatgtctgctttgatca |
225 |
Q |
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| T |
47605960 |
cttacaacttctgcacgtagaacctgagcctcttccttgcaaaacaaagtgagcaaaaacgtcaacaaaaaaggcgatttagtgatgtctgctttgatca |
47606059 |
T |
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| Q |
226 |
actttggtaaacttcgaaacttttcccgtacaacaaacatttcttgtgaaacaagccactctatattacttacacgtatatattctgcttgcaattc |
322 |
Q |
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| T |
47606060 |
actttggtaaacttcgaaacttttcccttacaacaaacatttcttgtgaaacaagccactctatattacttacacgtatatattctgcttgcaattc |
47606156 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 177
Target Start/End: Original strand, 4288499 - 4288575
Alignment:
| Q |
101 |
aattaaaattcacaatcataatattcttacaacttctgcacgtagaacctgagcctcttccttgcaaaacaaagtga |
177 |
Q |
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| T |
4288499 |
aattaaaattgataaccatactattcttaccagttctacacgcaaaacttgagcctcttccatgcaaaaccaagtga |
4288575 |
T |
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