View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20351_high_2 (Length: 461)
Name: NF20351_high_2
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20351_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 29837756 - 29838198
Alignment:
| Q |
1 |
acggctatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaagtgttactcaacatggttag |
100 |
Q |
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| T |
29837756 |
acggatatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaagtgttactcaacatggttag |
29837855 |
T |
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| Q |
101 |
ttttttagcaaaggtaaaattattctatgatatataagttgtgttgtaatttattgatgcatctgtgtcgtttgatttcatcttcaggtggttcaacgct |
200 |
Q |
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| T |
29837856 |
ttttttagcaaaggtaaaattattctatgatatataagttgtgttgtaatttattgatgcatcggtgtcgtgtgatttcatcttcaggtggttcaacgct |
29837955 |
T |
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| Q |
201 |
cgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggtatatcttgtgtttgttcgttagtacctcgatgttta |
300 |
Q |
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| T |
29837956 |
cgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggtaaatcttgtgtttgttcgttagtacctcgatgttta |
29838055 |
T |
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| Q |
301 |
aaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttgatgtatgctctctgtaagacaaagtactgattattattacttatcttt |
400 |
Q |
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| T |
29838056 |
aaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttgatgtatgctctctgtaagacaaaatactgattattattacttatcttt |
29838155 |
T |
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| Q |
401 |
atggtgtaggaagtcatttacaatacaaagtacagtttgtttg |
443 |
Q |
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| T |
29838156 |
atggtgtaggaagtcatttacaatacaaagtacagtttgtttg |
29838198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 101
Target Start/End: Complemental strand, 34628785 - 34628690
Alignment:
| Q |
6 |
tatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaagtgttactcaacatggttagt |
101 |
Q |
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| T |
34628785 |
tatctgctcttagaactcgtatcgttgtaatggctggtcaagaaggtcctacaattacaagaacaaaaagaaaaagtgcaactcaacatggttagt |
34628690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 265
Target Start/End: Complemental strand, 34628626 - 34628535
Alignment:
| Q |
174 |
gatttcatcttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggta |
265 |
Q |
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| T |
34628626 |
gatttcatcctcaggaggttcaacactggctgatcttctacaggctcttgaagactacttaccggtacttttgggattagtcaaagatggta |
34628535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 411 - 443
Target Start/End: Complemental strand, 34628451 - 34628419
Alignment:
| Q |
411 |
aagtcatttacaatacaaagtacagtttgtttg |
443 |
Q |
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| T |
34628451 |
aagtcatttacaatacaaagtacaatttgtttg |
34628419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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