View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20351_high_6 (Length: 313)
Name: NF20351_high_6
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20351_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 112 - 308
Target Start/End: Complemental strand, 19805176 - 19804980
Alignment:
| Q |
112 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
211 |
Q |
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| T |
19805176 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
19805077 |
T |
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| Q |
212 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgcttct |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19805076 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgtttct |
19804980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 112 - 308
Target Start/End: Complemental strand, 27775650 - 27775454
Alignment:
| Q |
112 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
211 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27775650 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
27775551 |
T |
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| Q |
212 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgcttct |
308 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27775550 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgtttct |
27775454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 112 - 308
Target Start/End: Original strand, 40577886 - 40578080
Alignment:
| Q |
112 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
211 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40577886 |
agttgtgatttctta--gtaattcaattccgattcaaacaataatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
40577983 |
T |
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| Q |
212 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttgcctttgcttct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |
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| T |
40577984 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatctctgttcttatttatttatttgcttttgtttct |
40578080 |
T |
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