View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20351_low_1 (Length: 499)
Name: NF20351_low_1
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20351_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Complemental strand, 34768585 - 34768120
Alignment:
| Q |
19 |
attccttcgccactaaccttacattgtatcgatcaagaatgacatcttattgactttgaatgtgtagatccactcaactaataggttttaatgcccctag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34768585 |
attccttcgccactaaccttacattgtatcgatcaagaatgacatcttattgactttgaatgtgtagatccactcaactaataggttttaatgcccctag |
34768486 |
T |
|
| Q |
119 |
cctctcaaaaatctccaagtttcattcttttttcaagtgctcttgtctcatcatctatagcattttttagtggaaaacaatgtccatatctttaacttgg |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34768485 |
cctctcaaaaatctccaagttccattcttttttcaagtgctcttgtctcatcatctatagcattttttagtgggaaacaatgtccatatctttaacttgg |
34768386 |
T |
|
| Q |
219 |
actcaatatatattctcgagtaagctaagtattcaacatatattgaaattttcactgagtcaataaatatagtaaaactctgatattgcgtaaaaaagtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34768385 |
actcaatatatattctcgagtaagctaagtattcaacatatattgaaattttcactgagtcaataaatatagtaaaactttgatattgcgtaaaaaagtt |
34768286 |
T |
|
| Q |
319 |
atataaagaagacaaatttagaaataaagaaacatgtcataaaactgggctaggttaaatatgagaataattacaaataaataaattattttaaataaat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34768285 |
gtataaagaagacaaatttagaaataaagaaacatgtcataaaactgggctaggttaaatatgagaataataacaaataaataaattattttaaataaat |
34768186 |
T |
|
| Q |
419 |
tcctgtagtcaataactaaatacgattaaagttggtttggattgggtttcatctttctctcctttg |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34768185 |
tcctgtagtcaataactaaatacgattaaagttggtttggactgggtttcatctttctctcctttg |
34768120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University