View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20351_low_11 (Length: 241)

Name: NF20351_low_11
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20351_low_11
NF20351_low_11
[»] chr6 (24 HSPs)
chr6 (14-224)||(33342160-33342370)
chr6 (14-224)||(34164761-34164971)
chr6 (14-224)||(6027151-6027360)
chr6 (14-224)||(34166983-34167193)
chr6 (14-224)||(25421208-25421419)
chr6 (14-224)||(16554772-16554982)
chr6 (14-224)||(16631328-16631538)
chr6 (7-224)||(16653008-16653225)
chr6 (25-224)||(27647777-27647973)
chr6 (14-224)||(16578573-16578783)
chr6 (14-224)||(16616597-16616807)
chr6 (82-224)||(13153886-13154028)
chr6 (25-223)||(412016-412214)
chr6 (25-181)||(3072857-3073014)
chr6 (25-140)||(6097577-6097695)
chr6 (28-182)||(31404770-31404932)
chr6 (25-224)||(2171587-2171792)
chr6 (109-182)||(3038998-3039071)
chr6 (28-182)||(5406295-5406456)
chr6 (28-182)||(5410620-5410781)
chr6 (109-180)||(4045423-4045494)
chr6 (109-182)||(2973034-2973107)
chr6 (109-182)||(21588931-21589004)
chr6 (109-182)||(21593664-21593737)
[»] chr4 (21 HSPs)
chr4 (14-224)||(5138193-5138403)
chr4 (14-224)||(5135967-5136178)
chr4 (14-224)||(7122585-7122796)
chr4 (14-224)||(7124804-7125015)
chr4 (14-224)||(8395508-8395716)
chr4 (14-224)||(8393299-8393507)
chr4 (41-181)||(31495414-31495556)
chr4 (28-143)||(13992425-13992544)
chr4 (28-224)||(29999861-30000063)
chr4 (129-224)||(12119559-12119653)
chr4 (41-182)||(56178732-56178882)
chr4 (109-182)||(9927553-9927626)
chr4 (109-182)||(41639426-41639499)
chr4 (109-182)||(54200001-54200074)
chr4 (116-224)||(5207897-5208003)
chr4 (109-181)||(26364236-26364308)
chr4 (109-180)||(47038507-47038577)
chr4 (113-211)||(48142444-48142542)
chr4 (109-182)||(34570509-34570582)
chr4 (109-182)||(41639263-41639336)
chr4 (109-182)||(48143042-48143116)
[»] scaffold0674 (1 HSPs)
scaffold0674 (14-224)||(3781-3990)
[»] chr8 (15 HSPs)
chr8 (14-224)||(15290427-15290637)
chr8 (14-224)||(15470796-15471006)
chr8 (14-224)||(42575379-42575589)
chr8 (21-224)||(25689865-25690067)
chr8 (25-224)||(3439418-3439616)
chr8 (25-157)||(2627649-2627782)
chr8 (28-143)||(34254464-34254586)
chr8 (109-182)||(15212786-15212859)
chr8 (109-148)||(8965820-8965859)
chr8 (109-224)||(42498193-42498307)
chr8 (109-182)||(27811278-27811351)
chr8 (112-181)||(44353796-44353865)
chr8 (109-181)||(30291606-30291679)
chr8 (111-182)||(40321082-40321153)
chr8 (109-180)||(43036423-43036494)
[»] chr5 (22 HSPs)
chr5 (14-224)||(16546534-16546744)
chr5 (14-224)||(16544312-16544522)
chr5 (14-224)||(40379995-40380204)
chr5 (14-224)||(40382206-40382415)
chr5 (14-224)||(25078023-25078234)
chr5 (14-224)||(25135992-25136203)
chr5 (14-224)||(10593161-10593371)
chr5 (21-224)||(22536345-22536545)
chr5 (25-224)||(29751215-29751414)
chr5 (25-224)||(29720278-29720477)
chr5 (25-224)||(29722438-29722637)
chr5 (25-224)||(18441703-18441902)
chr5 (25-224)||(9789279-9789478)
chr5 (25-224)||(16409389-16409588)
chr5 (25-224)||(26177797-26177995)
chr5 (25-140)||(26170688-26170804)
chr5 (28-182)||(25412672-25412833)
chr5 (109-211)||(13695757-13695859)
chr5 (112-182)||(39468644-39468714)
chr5 (109-182)||(13488203-13488276)
chr5 (109-182)||(42428525-42428598)
chr5 (109-181)||(40147261-40147333)
[»] chr3 (34 HSPs)
chr3 (14-224)||(4598578-4598788)
chr3 (14-224)||(4600799-4601009)
chr3 (14-224)||(10056122-10056332)
chr3 (14-224)||(10058344-10058554)
chr3 (14-224)||(10060566-10060776)
chr3 (14-224)||(10062788-10062998)
chr3 (14-224)||(10065010-10065220)
chr3 (14-224)||(10211298-10211508)
chr3 (14-224)||(10209078-10209288)
chr3 (14-213)||(10067232-10067431)
chr3 (14-224)||(25637331-25637540)
chr3 (14-224)||(3617352-3617563)
chr3 (25-224)||(6716414-6716612)
chr3 (25-224)||(54635039-54635237)
chr3 (25-224)||(45282897-45283099)
chr3 (25-143)||(6718598-6718718)
chr3 (25-224)||(801005-801205)
chr3 (74-224)||(7780059-7780208)
chr3 (28-182)||(45095075-45095236)
chr3 (109-182)||(5236551-5236624)
chr3 (25-111)||(23198111-23198199)
chr3 (25-111)||(23200310-23200398)
chr3 (109-181)||(4569952-4570024)
chr3 (28-182)||(5260418-5260581)
chr3 (109-196)||(51352191-51352278)
chr3 (28-224)||(9636181-9636385)
chr3 (127-181)||(51398833-51398886)
chr3 (109-181)||(7762265-7762337)
chr3 (109-181)||(34491212-34491284)
chr3 (109-181)||(43401898-43401970)
chr3 (109-182)||(5433971-5434046)
chr3 (109-148)||(29196515-29196555)
chr3 (111-182)||(31314447-31314518)
chr3 (109-180)||(44331545-44331616)
[»] scaffold0565 (1 HSPs)
scaffold0565 (14-224)||(2659-2868)
[»] chr7 (24 HSPs)
chr7 (14-224)||(6594613-6594822)
chr7 (14-224)||(18388815-18389024)
chr7 (14-224)||(18392251-18392460)
chr7 (14-224)||(6592395-6592604)
chr7 (14-224)||(32060377-32060590)
chr7 (25-224)||(20343811-20344010)
chr7 (14-180)||(1562103-1562268)
chr7 (25-224)||(24789755-24789954)
chr7 (25-181)||(43504252-43504409)
chr7 (25-224)||(39731283-39731482)
chr7 (25-111)||(48408709-48408797)
chr7 (109-182)||(48491579-48491652)
chr7 (109-182)||(23343975-23344048)
chr7 (41-182)||(47674038-47674189)
chr7 (41-140)||(25615785-25615885)
chr7 (109-182)||(4586161-4586234)
chr7 (109-182)||(22269973-22270046)
chr7 (109-182)||(27347817-27347890)
chr7 (109-182)||(30024827-30024900)
chr7 (109-181)||(34310812-34310884)
chr7 (109-182)||(43864244-43864317)
chr7 (109-181)||(2361068-2361140)
chr7 (109-182)||(4253624-4253697)
chr7 (109-181)||(29608737-29608809)
[»] chr2 (10 HSPs)
chr2 (14-224)||(12647441-12647650)
chr2 (25-224)||(6266605-6266804)
chr2 (88-224)||(13656087-13656221)
chr2 (25-211)||(32289479-32289665)
chr2 (25-224)||(4484385-4484592)
chr2 (109-183)||(13121769-13121843)
chr2 (28-181)||(36205760-36205921)
chr2 (38-182)||(38312159-38312313)
chr2 (25-224)||(30833252-30833459)
chr2 (114-224)||(33648176-33648285)
[»] chr1 (17 HSPs)
chr1 (14-224)||(44203536-44203745)
chr1 (14-224)||(9036320-9036529)
chr1 (25-224)||(40282291-40282490)
chr1 (25-224)||(21053872-21054071)
chr1 (25-224)||(9987116-9987314)
chr1 (25-224)||(20622292-20622492)
chr1 (25-111)||(51765302-51765389)
chr1 (128-181)||(6378603-6378655)
chr1 (109-183)||(37503648-37503722)
chr1 (109-182)||(3156865-3156938)
chr1 (109-182)||(28220321-28220394)
chr1 (109-182)||(49918350-49918423)
chr1 (109-181)||(44455160-44455232)
chr1 (130-182)||(928071-928123)
chr1 (114-182)||(12318618-12318685)
chr1 (108-182)||(13316447-13316521)
chr1 (109-180)||(37033170-37033241)
[»] scaffold0137 (1 HSPs)
scaffold0137 (14-224)||(6177-6386)
[»] scaffold0002 (1 HSPs)
scaffold0002 (28-182)||(434443-434606)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 33342370 - 33342160
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33342370 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 33342271  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33342270 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtactccttttgtaaagaactcatttg 33342171  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  33342170 atagtggattg 33342160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 34164761 - 34164971
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34164761 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 34164860  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34164861 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 34164960  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  34164961 atagtggattg 34164971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 6027151 - 6027360
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6027151 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 6027250  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6027251 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 6027349  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  6027350 atagtggattg 6027360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 34166983 - 34167193
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34166983 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 34167082  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34167083 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaacttatttg 34167182  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  34167183 atagtggattg 34167193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 25421208 - 25421419
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25421208 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 25421307  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25421308 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatt 25421406  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  25421407 tgatagtggattg 25421419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 16554772 - 16554982
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  16554772 caaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 16554871  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16554872 gtgagattgggaaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatt 16554969  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  16554970 tgatagtggattg 16554982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 16631328 - 16631538
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  16631328 caaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 16631427  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16631428 gtgagattgggaaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatt 16631525  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  16631526 tgatagtggattg 16631538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 16653008 - 16653225
Alignment:
Q  7 ggagaagcaaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgag 104  Q
    |||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  16653008 ggagaatcaaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgag 16653107  T
Q  105 tgtcttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaaga 204  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| ||||    
T  16653108 tgtcttggtgagattgggaaaagggtaaaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aaga 16653205  T
Q  205 actcatttgatagtggattg 224  Q
    ||||||||||||||||||||    
T  16653206 actcatttgatagtggattg 16653225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 27647777 - 27647973
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggtgagattgggaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27647777 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccatgtagagagaatcattgagtgtcttggtgagattgggaa 27647876  T
Q  125 aggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtggattg 224  Q
    | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||||    
T  27647877 aagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtggattg 27647973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 16578783 - 16578573
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  16578783 caaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacacgttgtaaagagagaatcattgagtgtcttg 16578684  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16578683 gtgagattgggaaaagggtagaaattagggtttgctcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatt 16578586  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  16578585 tgatagtggattg 16578573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 16616597 - 16616807
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  16616597 caaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacacgttgtaaagagagaatcattgagtgtcttg 16616696  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  16616697 gtgagattgggaaaagggtagaaattagggtttgctcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatt 16616794  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  16616795 tgatagtggattg 16616807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 13153886 - 13154028
Alignment:
Q  82 accttgtagagagaatcattgagtgtcttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13153886 accttgtagagagaatcattgagtgtcttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaac 13153985  T
Q  182 ctcttgtattccttttgtaaagaactcatttgatagtggattg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13153986 ctcttgtattccttttgtaaagaactcatttgatagtggattg 13154028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 25 - 223
Target Start/End: Original strand, 412016 - 412214
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||| || ||||||||||||  |||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||    
T  412016 ctctagggtttagagt-ctttgattagagcttctcttgggttgaaaacatgggaaacaccttgaagagagaaaatcattgagtgtcttggtgagattggg 412114  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa--cctcttgtattccttttgtaaagaactcatttgatagtgg 220  Q
    |||  |||||||||||||| |||||||| |||||| |    || ||||||||||||||  | | ||||||  ||||||| ||||||||| ||||||||||    
T  412115 aaaaaggtagaaattaggg-ttgttcattgtgaacttatcaaatctaatttcttgtaactctttttgtatctcttttgt-aagaactca-ttgatagtgg 412211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 3073014 - 3072857
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  3073014 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatgggaaacaccttgaagagagaaaatcattgagtgtcttggtgagattgg 3072916  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac 181  Q
    ||||  |||||||||||||| |||||||| |||||| ||||  || |||||||||||||||    
T  3072915 gaaaatggtagaaattaggg-ttgttcattgtgaac-ttgtcaaatctaatttcttgtaac 3072857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 6097695 - 6097577
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||   || || ||||||||||||| |||||||||||||    
T  6097695 ctctagggtttagggttctttgattagagtatctctttggttgggaaacatggtaaacaccttggtgagtgaaaatcattgagtgttttggtgagattgg 6097596  T
Q  122 gaaaggggtagaaattagg 140  Q
     |||  |||||||||||||    
T  6097595 aaaaatggtagaaattagg 6097577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 31404932 - 31404770
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtcttg-------gtgaga 117  Q
    |||||||||||||  |||||||||||| ||||||||||| |||||||| | ||||||||||   || || |||||||||||||||||       ||||||    
T  31404932 tagggtttagggtcttttgattagagt-tctcttgggttggaaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcatcagtgaga 31404834  T
Q  118 ttgggaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    ||||||||  |||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  31404833 ttgggaaaatggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 31404770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 2171792 - 2171587
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtc-------ttggtg 114  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | |||||| | ||||||||||   || || ||||||||||||||       ||||||    
T  2171792 ctctagggtttagggt-ctttgattagagtttctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtg 2171694  T
Q  115 agattggg-aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcattt 212  Q
    |||||||| |||  |||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||  ||||| ||  ||||| ||||||||| ||    
T  2171693 agattgggaaaaatggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaaccctttgta-tctctttgt-aagaactca-tt 2171599  T
Q  213 gatagtggattg 224  Q
    ||||||||||||    
T  2171598 gatagtggattg 2171587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 3039071 - 3038998
Alignment:
Q  109 ttggtgagattgggaaagg-ggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||   |||||||||||||||| |||||| |||| | || |||||||||||||||||||||    
T  3039071 ttggtgagattgggaaaattggtagaaattagggtt-gttcattgtgagctttttgaagctaatttcttgtaacc 3038998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 5406456 - 5406295
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||| ||||||  |||||| | ||||||||||  ||| |||  |||||||||||||||       ||||||    
T  5406456 tagggtttagggt-ctttgattagagt-tctctcgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgaga 5406359  T
Q  118 ttgggaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    ||||||||  |||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  5406358 ttgggaaaatggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 5406295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 5410781 - 5410620
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||| ||||||  |||||| | ||||||||||  ||| |||  |||||||||||||||       ||||||    
T  5410781 tagggtttagggt-ctttgattagagt-tctctcgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgaga 5410684  T
Q  118 ttgggaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    ||||||||  |||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  5410683 ttgggaaaatggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 5410620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 4045423 - 4045494
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa 180  Q
    |||| ||||||||||||  ||||||||||||||||||||| |  ||| | |  |||||||||||||||||||    
T  4045423 ttggagagattgggaaaatggtagaaattagggtttgttctttatgagcttgttgaagctaatttcttgtaa 4045494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 2973107 - 2973034
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  |||||||||||||| ||||||| | |||| | |  |||||||||||||||||||||    
T  2973107 ttggtgagattgggaaaatgggtagaaattagg-tttgttctttgtgagcttgttgaagctaatttcttgtaacc 2973034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 21588931 - 21589004
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  |||||||||||||||||||||    
T  21588931 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaacc 21589004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 21593664 - 21593737
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  |||||||||||||||||||||    
T  21593664 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaacc 21593737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 5138193 - 5138403
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5138193 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaataccttgtagagagaatcattgagtgtcttggt 5138292  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5138293 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 5138392  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  5138393 atagtggattg 5138403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 5135967 - 5136178
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaa-catgggaaacaccttgtagagagaatcattgagtgtcttgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5135967 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaaacatgggaaataccttgtagagagaatcattgagtgtcttgg 5136066  T
Q  113 tgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcattt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5136067 tgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcattt 5136166  T
Q  213 gatagtggattg 224  Q
    ||||||||||||    
T  5136167 gatagtggattg 5136178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 7122585 - 7122796
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  7122585 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 7122684  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  7122685 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaaactaatttcttgtaacctcttgtattccttttgtaaagaactcatt 7122783  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  7122784 tgatagtggattg 7122796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 7124804 - 7125015
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  7124804 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 7124903  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  7124904 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaaactaatttcttgtaacctcttgtattccttttgtaaagaactcatt 7125002  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  7125003 tgatagtggattg 7125015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 8395508 - 8395716
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395508 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 8395607  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  8395608 gagattgggaaaagggtagaaattagggtttgttcatagtgaaca-tgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatttg 8395705  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  8395706 atagtggattg 8395716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 8393299 - 8393507
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8393299 caaaggggaagctctagggtttatggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 8393398  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |||||||| |||||||||||||    
T  8393399 gagattgggaaaagggtagaaattagggtttgttcatagtgaaca-tgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatttg 8393496  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  8393497 atagtggattg 8393507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 31495556 - 31495414
Alignment:
Q  41 tctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgggaaaggggtagaaatt 137  Q
    |||||||||||||  ||||||||||||  ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  31495556 tctttgattagagcttctcttgggttgggaaacatgggaaacaccttgaagagagaaaatcattgagtgtcttggtgagattgggaaaagggtagaaatt 31495457  T
Q  138 agggtttgttcatagtgaacattgt-gaagctaatttcttgtaac 181  Q
    | || |||||||| |||||| ||||  || |||||||||||||||    
T  31495456 a-ggattgttcattgtgaac-ttgtcaaatctaatttcttgtaac 31495414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 13992544 - 13992425
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattggg-- 122  Q
    ||||||||||||| ||||||||||||| ||||||||||||  |||||| | ||||||||||  ||| |||  ||||||||||||||||||||||||||      
T  13992544 tagggtttagggt-ctttgattagagtctctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttggtgagattgggaa 13992446  T
Q  123 aaaggggtagaaattagggtt 143  Q
    ||| |||||||||||||||||    
T  13992445 aaaagggtagaaattagggtt 13992425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 30000063 - 29999861
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||||||||| | |||||| | ||||||||||  ||| |||  || ||||||||||||       ||||||    
T  30000063 tagggtttagggt-ctttgattagagt-tctcttgggtttggaaacattgtaaacaccttggtgagtgaaaatcgttgagtgtcttgttcattggtgaga 29999966  T
Q  118 ttgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatttgata 216  Q
    |||||||| ||||||||||||||| |||||| | ||||||||    |||||||||||||||||| || ||||||   |||||| ||||||||| ||||||    
T  29999965 ttgggaaaagggtagaaattaggg-ttgttctttgtgaacatgtcaaagctaatttcttgtaactcttttgtatcttttttgt-aagaactca-ttgata 29999869  T
Q  217 gtggattg 224  Q
    ||||||||    
T  29999868 gtggattg 29999861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 12119559 - 12119653
Alignment:
Q  129 gtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa-cctcttgtattccttttgtaaagaactcatttgatagtggattg 224  Q
    |||||||||| ||||||||| | |||||| || ||||||||||||||||||| ||| ||||| ||  |||||||||||||||||| |||||||||||    
T  12119559 gtagaaattatggtttgttctttgtgaactttttgaagctaatttcttgtaacccttttgta-tctctttgtaaagaactcattt-atagtggattg 12119653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 56178882 - 56178732
Alignment:
Q  41 tctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgagattgggaaag-ggg 129  Q
    |||||||||||||| ||||||||||||  |||||| | ||||||||||  ||| |||  |||||||||||||||       ||||||||||||||  |||    
T  56178882 tctttgattagagt-tctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgagattgggaaaaaggg 56178784  T
Q  130 tagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  56178783 tagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 56178732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 9927626 - 9927553
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  9927626 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 9927553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 41639426 - 41639499
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||| |||||||||||  ||||||||||||||||| |||| | |||||| || |||||||||||||||||||||    
T  41639426 ttggtaagattgggaaaatgggtagaaattagggtt-gttctttgtgaactttttgaagctaatttcttgtaacc 41639499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 54200074 - 54200001
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  54200074 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 54200001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 5208003 - 5207897
Alignment:
Q  116 gattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtat-tccttttgtaaagaactcatttga 214  Q
    |||||| ||| |||||||||||||||||||||| | |||||| |  |||||||||||| ||| |||| ||||||| ||  ||||| ||||||||| ||||    
T  5208003 gattggaaaaagggtagaaattagggtttgttctttgtgaacttgttgaagctaatttattgcaacc-cttgtatatctatttgt-aagaactca-ttga 5207907  T
Q  215 tagtggattg 224  Q
    ||||||||||    
T  5207906 tagtggattg 5207897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 26364236 - 26364308
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||||| |  ||||||||||||||||||||    
T  26364236 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaac 26364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 47038577 - 47038507
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa 180  Q
    ||||||||||||| ||| ||||||||||||||| |||||| | |||| | |  |||||||||||||||||||    
T  47038577 ttggtgagattggaaaatgggtagaaattaggg-ttgttctttgtgagcttgttgaagctaatttcttgtaa 47038507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 48142542 - 48142444
Alignment:
Q  113 tgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtat-tccttttgtaaagaactcatt 211  Q
    ||||||||||||   | ||||||||||||||||||| | |||| | |  |||||||| |||||||||||| ||||||| ||  |||||||||||||||||    
T  48142542 tgagattgggaacatgatagaaattagggtttgttctttgtgagcttgttgaagctagtttcttgtaacc-cttgtatatctctttgtaaagaactcatt 48142444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 34570582 - 34570509
Alignment:
Q  109 ttggtgagattgggaaagg-ggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||   |||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  34570582 ttggtgagattgggaaaataggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 34570509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 41639263 - 41639336
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||| |||||||||||  ||||||||||||||||| |||| | || ||| || |||||||||||||||||||||    
T  41639263 ttggtaagattgggaaaatgggtagaaattagggtt-gttctttgtaaactttttgaagctaatttcttgtaacc 41639336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 48143042 - 48143116
Alignment:
Q  109 ttggtgagattgggaaagg--ggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||    |||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  48143042 ttggtgagattgggaaaaaaaggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 48143116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 3990 - 3781
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3990 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 3891  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3890 gagattgggaaaggggtagaaattagggtttgttcatagtgaaca-tgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 3792  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  3791 atagtggattg 3781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 15290427 - 15290637
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15290427 caaagggaaagctctagggtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 15290526  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15290527 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 15290626  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  15290627 atagtggattg 15290637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 15470796 - 15471006
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15470796 caaagggaaagctctagggtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 15470895  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15470896 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 15470995  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  15470996 atagtggattg 15471006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 42575589 - 42575379
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42575589 caaagggaaagctctagggtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 42575490  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42575489 gagattgggaaaggggtagaaattagggattgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 42575390  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  42575389 atagtggattg 42575379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 25689865 - 25690067
Alignment:
Q  21 gaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttggtgagat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  25689865 gaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttggtgagat 25689964  T
Q  119 tgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagt 218  Q
    |||||||  ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||    
T  25689965 tgggaaaaaggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagt 25690061  T
Q  219 ggattg 224  Q
    ||||||    
T  25690062 ggattg 25690067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 3439418 - 3439616
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  3439418 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagaaaatcattgagtgtcttggtgagattggg 3439517  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtggat 222  Q
    ||| ||||||||||||||||||||||||  ||||| |||  |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||    
T  3439518 aaaagggtagaaattagggtttgttcattatgaac-ttggcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtggat 3439614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 2627649 - 2627782
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  2627649 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatgggaaacaccttgaagagagaaaatcattgagtgtcttggtgagattgg 2627747  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaac 157  Q
    |||| ||||||||||||||| |||||||| ||||||    
T  2627748 gaaaagggtagaaattaggg-ttgttcattgtgaac 2627782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 34254586 - 34254464
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgagat 118  Q
    ||||||||||||| ||||||||||||| |||||||||||| | |||| | ||||||||||  ||| |||  |||||||||||||||       |||||||    
T  34254586 tagggtttagggt-ctttgattagagt-tctcttgggttggagacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgagat 34254489  T
Q  119 tgggaaaggggtagaaattagggtt 143  Q
    ||||||| |||||||||||||||||    
T  34254488 tgggaaaagggtagaaattagggtt 34254464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 15212786 - 15212859
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  15212786 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 15212859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 8965859 - 8965820
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttc 148  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  8965859 ttggtgagattgggaaaaaggtagaaattagggtttgttc 8965820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 42498193 - 42498307
Alignment:
Q  109 ttggtgagattgggaaagg--ggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa-cctcttgtattccttttgtaaagaa 205  Q
    |||||||||||||||||    |||||||||||||||| |||| | |||||| |  ||||||||||||||||||| ||| ||||||| | ||||| |||||    
T  42498193 ttggtgagattgggaaaaaaaggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacccttttgtatttc-tttgt-aagaa 42498289  T
Q  206 ctcatttgatagtggattg 224  Q
    |||| ||||||||||||||    
T  42498290 ctca-ttgatagtggattg 42498307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 27811278 - 27811351
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  |||||||||||||||||||||    
T  27811278 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaacc 27811351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 181
Target Start/End: Original strand, 44353796 - 44353865
Alignment:
Q  112 gtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    ||||||||||||||  ||||||||||||||||| |||| | |||||| |  ||||||||||||||||||||    
T  44353796 gtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaac 44353865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 30291606 - 30291679
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||| ||||  |||||||||||||| ||||||| | |||| | |  ||||||||||||||||||||    
T  30291606 ttggtgagattgagaaaatgggtagaaattaggttttgttctttgtgagcttgttgaagctaatttcttgtaac 30291679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 40321082 - 40321153
Alignment:
Q  111 ggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||  ||||||||||||||| |||||||| |||| | |  ||||| |||||||||||||||    
T  40321082 ggtgagattgggaaaatgggtagaaattaggg-ttgttcattgtgagcttgttgaagttaatttcttgtaacc 40321153  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 43036423 - 43036494
Alignment:
Q  109 ttggtgagattggg-aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa 180  Q
    |||||||||||||| ||| ||||||||||||||| |||||| | |||||| |  |||| ||||||||||||||    
T  43036423 ttggtgagattgggaaaatgggtagaaattaggg-ttgttctttgtgaacttgttgaaactaatttcttgtaa 43036494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 16546534 - 16546744
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16546534 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 16546633  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16546634 gagattaggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 16546733  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  16546734 atagtggattg 16546744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 16544312 - 16544522
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16544312 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 16544411  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  16544412 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttctcataacctcttgtatcccttttgtaaagaactcatttg 16544511  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  16544512 atagtggattg 16544522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 40379995 - 40380204
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40379995 caaaggggaagctctagggtttagggttctttgattagagtatctctcgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 40380094  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||    
T  40380095 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaaactaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 40380193  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  40380194 atagtggattg 40380204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 40382206 - 40382415
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382206 caaaggggaagctctagggtttagggttctttgattagagtatctctcgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 40382305  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40382306 gagattgggaaaggggtagaagttagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 40382404  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  40382405 atagtggattg 40382415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 25078023 - 25078234
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25078023 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 25078122  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25078123 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatt 25078221  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  25078222 tgatagtggattg 25078234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 25135992 - 25136203
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  25135992 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 25136091  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25136092 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatt 25136190  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  25136191 tgatagtggattg 25136203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10593161 - 10593371
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  10593161 caaagggggaactctagggtttagggttctttgattagagtatctcttgggtagaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 10593260  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||| | ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  10593261 gtgagattgggagaagggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatt 10593358  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  10593359 tgatagtggattg 10593371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 22536545 - 22536345
Alignment:
Q  21 gaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggtgagattg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  22536545 gaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccctgcagagagaatcattgagtgtcttggtgagattg 22536446  T
Q  121 ggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgg 220  Q
    ||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||    
T  22536445 ggaaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtgg 22536349  T
Q  221 attg 224  Q
    ||||    
T  22536348 attg 22536345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 29751414 - 29751215
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29751414 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtgagattggg 29751315  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| |||||||||||||||||||||||| |||||| ||||  || ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||    
T  29751314 aaaagggtagaaattagggtttgttcattgtgaac-ttgtcaaatctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtgga 29751218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 29720278 - 29720477
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29720278 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtgagattggg 29720377  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| ||||||||||||||||| |||||| |||||| ||||  || ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||    
T  29720378 aaaagggtagaaattagggttagttcattgtgaac-ttgtctaatctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtgga 29720474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 29722438 - 29722637
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29722438 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtgagattggg 29722537  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| ||||||||||||||||| |||||| |||||| ||||  || ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||    
T  29722538 aaaagggtagaaattagggttagttcattgtgaac-ttgtctaatctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtgga 29722634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 18441902 - 18441703
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  |||||||||||||||||||  ||| |||  |||||||||||||||||||||||||    
T  18441902 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatgggaaacaccttggtgagtgaaaatcattgagtgtcttggtgagattgg 18441804  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatttgatagtg 219  Q
     ||| ||||||||||||||| |||||| | |||||| ||||  || ||||||||||||||| || ||||||  ||||||| ||||||||| |||||||||    
T  18441803 aaaaagggtagaaattaggg-ttgttccttgtgaac-ttgtcaaatctaatttcttgtaactcttttgtatctcttttgt-aagaactca-ttgatagtg 18441708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 9789478 - 9789279
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  |||||||||||||||||||  ||| |||  |||||||||||||||||||||||||    
T  9789478 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatgggaaacaccttggtgagtgaaaatcattgagtgtcttggtgagattgg 9789380  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatttgatagtg 219  Q
     ||| |||||||||||| || |||||| | |||||| ||||  || ||||||||||||||| || ||||||  ||||||| ||||||||| |||||||||    
T  9789379 aaaaagggtagaaattaagg-ttgttccttgtgaac-ttgtcaaatctaatttcttgtaactcttttgtatctcttttgt-aagaactca-ttgatagtg 9789284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 16409389 - 16409588
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  |||||||| ||||||||||  ||| |||  |||||||||||||||||||||||||    
T  16409389 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatggtaaacaccttggtgagtgaaaatcattgagtgtcttggtgagattgg 16409487  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatttgatagtg 219  Q
     ||| ||||||||||||||| |||||| | |||||| ||||  || ||||||||||||||| || ||||||  ||||||| ||||||||| |||||||||    
T  16409488 aaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaatctaatttcttgtaactcttttgtatctcttttgt-aagaactca-ttgatagtg 16409583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 26177797 - 26177995
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  |||||||| ||||||||||  ||| |||  ||||||||||||||||||||||| |    
T  26177797 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatggtaaacaccttggtgagtgaaaatcattgagtgtcttggtgagatt-g 26177894  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatttgatagtg 219  Q
    |||| ||||||||||||||| |||||| | |||||| ||||  || ||||||||||||||| || ||||||  ||||||| ||||||||| |||||||||    
T  26177895 gaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaatctaatttcttgtaactcttttgtatctcttttgt-aagaactca-ttgatagtg 26177990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 26170688 - 26170804
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||| ||  ||||||||||||  |||||||| ||||||||||  ||| |||  ||||||||||||||||||||||| |    
T  26170688 ctctagggtttagagt-ctttgattacagcttctcttgggttgggaaacatggtaaacaccttggtgagtgaaaatcattgagtgtcttggtgagatt-g 26170785  T
Q  122 gaaaggggtagaaattagg 140  Q
    |||| ||||||||||||||    
T  26170786 gaaaagggtagaaattagg 26170804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 25412672 - 25412833
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||||||||||  |||||| | ||||||||||  ||| |||  |||||||||||||||       ||||||    
T  25412672 tagggtttagggt-ctttgattagagt-tctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgaga 25412769  T
Q  118 ttgggaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    |||||||| ||||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  25412770 ttgggaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 25412833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 13695859 - 13695757
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa-cctcttgtattccttttgtaaagaact 207  Q
    |||| |||||||||||| ||||| |||||||||||||||| | |||| | |  | ||||||||||||||||| ||| ||||| ||  |||||||||||||    
T  13695859 ttggagagattgggaaaagggtacaaattagggtttgttctttgtgagcttgttaaagctaatttcttgtaacccttttgta-tctctttgtaaagaact 13695761  T
Q  208 catt 211  Q
    ||||    
T  13695760 catt 13695757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 39468714 - 39468644
Alignment:
Q  112 gtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  39468714 gtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 39468644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 13488203 - 13488276
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||| |||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  13488203 ttggtaagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 13488276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 42428598 - 42428525
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  |||||||||||| ||||| ||| | |||||| |  |||||||||||||||||||||    
T  42428598 ttggtgagattgggaaaatgggtagaaattatggttt-ttctttgtgaacttgttgaagctaatttcttgtaacc 42428525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 40147261 - 40147333
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  ||||||||||||||||||||    
T  40147261 ttggtgagattgggaaaatgggtagaaattagggtt-gttcttcgtgagcttgttgaagctaatttcttgtaac 40147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 4598788 - 4598578
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4598788 caaagggaaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccctgtagagagaatcattgagtgtcttggt 4598689  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4598688 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 4598589  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  4598588 atagtggattg 4598578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 4601009 - 4600799
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4601009 caaagggaaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 4600910  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4600909 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaaccttttgtattccttttgtaaagaactcatttg 4600810  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  4600809 atagtggattg 4600799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10056122 - 10056332
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10056122 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10056221  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10056222 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10056321  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10056322 atagtggattg 10056332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10058344 - 10058554
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10058344 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10058443  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10058444 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10058543  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10058544 atagtggattg 10058554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10060566 - 10060776
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10060566 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10060665  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10060666 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10060765  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10060766 atagtggattg 10060776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10062788 - 10062998
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10062788 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10062887  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10062888 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10062987  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10062988 atagtggattg 10062998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10065010 - 10065220
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10065010 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10065109  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10065110 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10065209  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10065210 atagtggattg 10065220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10211298 - 10211508
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10211298 caaagggaaagctctagggtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10211397  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10211398 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10211497  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10211498 atagtggattg 10211508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 10209078 - 10209288
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10209078 caaagggaaagctctagggtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10209177  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10209178 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtagtccttttgtaaagaactcatttg 10209277  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  10209278 atagtggattg 10209288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 10067232 - 10067431
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10067232 caaaggggaagctctagagtttagggttctttgattagagtacctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 10067331  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10067332 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtcaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 10067431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 25637331 - 25637540
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25637331 caaaggggtatctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 25637430  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25637431 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 25637529  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  25637530 atagtggattg 25637540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 3617352 - 3617563
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  3617352 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 3617451  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3617452 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatt 3617550  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  3617551 tgatagtggattg 3617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 6716414 - 6716612
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6716414 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttggtgagattggg 6716513  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtggat 222  Q
    ||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||    
T  6716514 aaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtggat 6716610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 54635039 - 54635237
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  54635039 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttggtgagattggg 54635138  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtggat 222  Q
    ||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||||    
T  54635139 aaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtggat 54635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 45282897 - 45283099
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgta--gagagaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  45282897 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgcaaagagagaatcattgagtgtcttggtgagattggg 45282996  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgt--aaagaactcatttgatagtgg 220  Q
    ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||| |||||| |   ||||||||||||||||||||    
T  45282997 aaaagggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaaccttttgtatccctttttttgtaagaactcatttgatagtgg 45283095  T
Q  221 attg 224  Q
    ||||    
T  45283096 attg 45283099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 6718598 - 6718718
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6718598 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttggtgagattggg 6718697  T
Q  123 aaaggggtagaaattagggtt 143  Q
    ||| |||||||||||||||||    
T  6718698 aaaagggtagaaattagggtt 6718718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 801005 - 801205
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||||  ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  801005 ctctagggtttagagt-ctttgattagagcttctcttgggttgggaaacatgggaaacaccttgaagagagaaaatcattgagtgtcttggtgagattgg 801103  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaa--cctcttgtattccttttgtaaagaactcatttgatagt 218  Q
    |||| ||||||||||||||| |||||||| |||||| ||||  || ||||||||||||||  | | ||||||  ||||||| ||||||||| ||||||||    
T  801104 gaaaagggtagaaattaggg-ttgttcattgtgaac-ttgtcaaatctaatttcttgtaactctttttgtatctcttttgt-aagaactca-ttgatagt 801199  T
Q  219 ggattg 224  Q
    ||||||    
T  801200 ggattg 801205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 224
Target Start/End: Complemental strand, 7780208 - 7780059
Alignment:
Q  74 tgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaa 170  Q
    |||||||||||||| ||||||||  |||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |||||| ||||  || ||||    
T  7780208 tgggaaacaccttgaagagagaaaatcattgagtgtcttcgtgagattgggaaaagggtagaaattaggg-ttgttcattgtgaac-ttgtcaaatctaa 7780111  T
Q  171 tttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtggattg 224  Q
    ||||||||||||| ||||||  ||||||| ||||||||| ||||||||||||||    
T  7780110 tttcttgtaaccttttgtatctcttttgt-aagaactca-ttgatagtggattg 7780059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 45095075 - 45095236
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttg-------gtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||||||||||  |||||| | ||||||||||  ||| |||  |||||||||||||||       ||||||    
T  45095075 tagggtttagggt-ctttgattagagt-tctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgaga 45095172  T
Q  118 ttgggaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    ||||||||  |||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  45095173 ttgggaaaatggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 45095236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 5236624 - 5236551
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  5236624 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 5236551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 23198199 - 23198111
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtcttg 111  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | |||||| | ||||||||||   || || |||||||||||||||||    
T  23198199 ctctagggtttagggt-ctttgattagagtttctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttg 23198111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 23200398 - 23200310
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtcttg 111  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | |||||| | ||||||||||   || || |||||||||||||||||    
T  23200398 ctctagggtttagggt-ctttgattagagtttctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttg 23200310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 4569952 - 4570024
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||||| |||| | |  ||||||||||||||||||||    
T  4569952 ttggtgagattgggaaaatgggtagaaattagggtt-gttcattgtgagcttattgaagctaatttcttgtaac 4570024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 182
Target Start/End: Complemental strand, 5260581 - 5260418
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtct-------tggtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||||||||||  |||||| | ||||||||||  ||| |||  |||||||||||||       ||||||||    
T  5260581 tagggtttagggt-ctttgattagagt-tctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttggtcattggtgaga 5260484  T
Q  118 ttggg--aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    |||||  ||| ||||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  5260483 ttgggaaaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 5260418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 51352278 - 51352191
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttt 196  Q
    ||||||||||| |||||  | ||||| ||||||||||||||| |||| | || | ||| |||||||||||||||  ||||||| ||||    
T  51352278 ttggtgagattaggaaaatgatagaagttagggtttgttcattgtgagctttttaaagttaatttcttgtaaccatttgtatttcttt 51352191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 9636385 - 9636181
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtc-------ttggtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||||||||| | ||| || | ||||||||||   || || ||||||||||||||       |||||||||    
T  9636385 tagggtttagggt-ctttgattagagtctctcttgggttgggaaatattgtaaacaccttggtgagtgaaaatcattgagtgtcttggtcattggtgaga 9636287  T
Q  118 ttgg--gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaa-cctcttgtattccttttgtaaagaactcatttg 213  Q
    ||||  |||| ||||||||||||||| |||||| | |||||| ||||  || |||||||||||||| ||| ||||| || |||||| ||||||||| |||    
T  9636286 ttgggagaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaaactaatttcttgtaacccttttgta-tctttttgt-aagaactca-ttg 9636192  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  9636191 atagtggattg 9636181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 51398833 - 51398886
Alignment:
Q  127 gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    ||||||||||||||||| |||| |||||||| |  ||||||||||||||||||||    
T  51398833 gggtagaaattagggtt-gttcttagtgaacttgttgaagctaatttcttgtaac 51398886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 7762265 - 7762337
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||| ||||  ||||||||||||||||| |||| | |||||| |  ||||||||||||||||||||    
T  7762265 ttggtgagattgagaaaaagggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaac 7762337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 34491212 - 34491284
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  ||||||||||||||||||||    
T  34491212 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaac 34491284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 43401970 - 43401898
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  ||||||||||||||||||||    
T  43401970 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaac 43401898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 5434046 - 5433971
Alignment:
Q  109 ttggtgagattggga--aaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||  ||  ||||||||||||||||||||| | |||| | |  | |||||||||||||||||||    
T  5434046 ttggtgagattgggagaaaatggtagaaattagggtttgttctttgtgagcttgttaaagctaatttcttgtaacc 5433971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 29196555 - 29196515
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttc 148  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  29196555 ttggtgagattgggaaaatgggtagaaattagggtttgttc 29196515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 31314447 - 31314518
Alignment:
Q  111 ggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||| ||||  ||||||||||||||||| |||||| |||| | |  |||||||||||||||||||||    
T  31314447 ggtgagattgagaaaatgggtagaaattagggtt-gttcattgtgatcttgttgaagctaatttcttgtaacc 31314518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 180
Target Start/End: Original strand, 44331545 - 44331616
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa 180  Q
    ||||||||||| |||||  ||||||||||||||||| |||||| |||| | |  |||||||||||||||||||    
T  44331545 ttggtgagattaggaaaatgggtagaaattagggtt-gttcattgtgagcttgttgaagctaatttcttgtaa 44331616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 2868 - 2659
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2868 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 2769  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2768 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 2670  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  2669 atagtggattg 2659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 6594822 - 6594613
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6594822 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 6594723  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6594722 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 6594624  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  6594623 atagtggattg 6594613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 18389024 - 18388815
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18389024 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 18388925  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18388924 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 18388826  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  18388825 atagtggattg 18388815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 18392460 - 18392251
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18392460 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 18392361  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18392360 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 18392262  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  18392261 atagtggattg 18392251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 6592604 - 6592395
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592604 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 6592505  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6592504 gagattgggaaatgggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 6592406  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  6592405 atagtggattg 6592395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 32060590 - 32060377
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  32060590 caaagggtaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 32060491  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattcc--ttttgtaaagaactca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  32060490 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccctttttgtaaagaactca 32060392  T
Q  210 tttgatagtggattg 224  Q
    |||||||||||||||    
T  32060391 tttgatagtggattg 32060377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 20343811 - 20344010
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  20343811 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttggtgagattggg 20343910  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtggat 222  Q
    ||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  20343911 aaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactcatttgatagtggat 20344008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 1562268 - 1562103
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1562268 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 1562169  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa 180  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  1562168 gagattgggaaaagggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaa 1562103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 24789755 - 24789954
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  24789755 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtaagattggg 24789854  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| ||||| |||||||||||||||||| |||||| ||||  |||||||||||||||||| | |||||| ||||||||||| ||||| ||||||||||||    
T  24789855 aaaagggtaaaaattagggtttgttcattgtgaac-ttgtcaaagctaatttcttgtaacattttgtatcccttttgtaaa-aactc-tttgatagtgga 24789951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 43504409 - 43504252
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  |||||||| |||  ||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||    
T  43504409 ctctagggtttagagt-ctttgattagagcttctcttggcttgggaaacatgggaaacaccttgaagagagaaaatcatcgagtgtcttggtgagattgg 43504311  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac 181  Q
    |||| ||||||||||||||| |||||||| |||||| ||||  || |||||||||||||||    
T  43504310 gaaaagggtagaaattaggg-ttgttcattgtgaac-ttgtcaaatctaatttcttgtaac 43504252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 39731283 - 39731482
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    |||||||||||||||| ||||||||||||  ||||||||||||  |||||| | ||||||||||  ||| |||  |||||||||||||||||||||||||    
T  39731283 ctctagggtttagggt-ctttgattagagcttctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttggtgagattgg 39731381  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgtga-agctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatttgatagtg 219  Q
     ||| ||||||||||||||| |||||| | |||||| |||| | | ||||||||||||||| || ||||||  ||||||| ||||||||| |||||||||    
T  39731382 aaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcagatctaatttcttgtaactcttttgtatctcttttgt-aagaactca-ttgatagtg 39731477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 48408709 - 48408797
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttg--tagagagaatcattgagtgtcttg 111  Q
    |||||||||||||||| ||||||||||||| ||||||||||| | |||||| | ||||||||||   || || |||||||||||||||||    
T  48408709 ctctagggtttagggt-ctttgattagagtttctcttgggttgggaaacattgtaaacaccttggtgagtgaaaatcattgagtgtcttg 48408797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 48491579 - 48491652
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  48491579 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 48491652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 23343975 - 23344048
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||||||| ||||| |||||||||||| ||||| ||| | |||| | |  |||||||||||||||||||||    
T  23343975 ttggtgagatttggaaaagggtagaaattaaggtttattctttgtgagcttgttgaagctaatttcttgtaacc 23344048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 182
Target Start/End: Complemental strand, 47674189 - 47674038
Alignment:
Q  41 tctttgattagagtatctcttgggttg-aaaacatgggaaacaccttgt---agagagaatcattgagtgtcttg-------gtgagattgggaaag-gg 128  Q
    |||||||||||||| |||||||||||| ||||||| | ||||||||||    || || |||||||||||||||||       ||||||||| ||||  ||    
T  47674189 tctttgattagagt-tctcttgggttggaaaacattgtaaacaccttgggtgagtgaaaatcattgagtgtcttgttcattggtgagattgagaaaatgg 47674091  T
Q  129 gtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  47674090 gtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 47674038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 25615785 - 25615885
Alignment:
Q  41 tctttgattagagtatctcttgggttg-aaaacatgggaaacaccttgt---agagagaatcattgagtgtcttggtgagattggg-aaaggggtagaaa 135  Q
    |||||||||||||| |||||||||||| ||||||| | ||||||||||    ||||| |||||||||||||||   |||||||||| ||| |||||||||    
T  25615785 tctttgattagagt-tctcttgggttggaaaacattgtaaacaccttgggtgagagaaaatcattgagtgtct---tgagattgggaaaatgggtagaaa 25615880  T
Q  136 ttagg 140  Q
    |||||    
T  25615881 ttagg 25615885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 4586161 - 4586234
Alignment:
Q  109 ttggtgagattggg-aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||| ||| ||||||||||||||| |||||| | |||||| |  |||||||||||| ||||||||    
T  4586161 ttggtgagattgggaaaatgggtagaaattaggg-ttgttctttgtgaacttgttgaagctaattttttgtaacc 4586234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 22269973 - 22270046
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  |||||||||||||||||||||    
T  22269973 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaacc 22270046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 27347817 - 27347890
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||||||||  |||||||||||||| || |||| | |||||| |  |||||||||||||||||||||    
T  27347817 ttggtgagattgggaaaatgggtagaaattaggatt-gttctttgtgaacttgttgaagctaatttcttgtaacc 27347890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 30024900 - 30024827
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||| ||||  ||||||||||||||||| |||||| |||| | |  |||||||||||||||||||||    
T  30024900 ttggtgagattgagaaaatgggtagaaattagggtt-gttcattgtgagcttgttgaagctaatttcttgtaacc 30024827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 34310884 - 34310812
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | ||||| ||||| |||||||||||||||||||    
T  34310884 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgaa-attgttgaagctaatttcttgtaac 34310812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 43864244 - 43864317
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||||||||| |||| ||||||||||||||| |||||| | |||||| |  ||||||||||||| |||||||    
T  43864244 ttggtgagattggaaaagtgggtagaaattaggg-ttgttctttgtgaacttgttgaagctaatttcctgtaacc 43864317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 2361140 - 2361068
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  ||||||||||||||||||||    
T  2361140 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaac 2361068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 4253697 - 4253624
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||| ||||| |||  ||||||||||||||||||||| | |||| | |  ||||||||||||| |||||||    
T  4253697 ttggtgaaattggtaaaatggtagaaattagggtttgttctttgtgagcttgttgaagctaatttcatgtaacc 4253624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 29608737 - 29608809
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  ||||||||||||||||||||    
T  29608737 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaac 29608809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 12647650 - 12647441
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12647650 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 12647551  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12647550 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 12647452  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  12647451 atagtggattg 12647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 6266605 - 6266804
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  6266605 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtgagattggg 6266704  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| |||||||||||||||||||||||| |||||| ||||  || ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||    
T  6266705 aaaagggtagaaattagggtttgttcattgtgaac-ttgtcaaatctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtgga 6266801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 13656221 - 13656087
Alignment:
Q  88 tagagagaatcattgagtgtcttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttg 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  13656221 tagagagaatcattgagtgtcttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttg 13656123  T
Q  188 tattccttttgtaaagaactcatttgatagtggattg 224  Q
    ||| |||||||| ||||||||||||||||||||||||    
T  13656122 tatcccttttgt-aagaactcatttgatagtggattg 13656087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 32289479 - 32289665
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggtt-gaaaacatgggaaacaccttgtagagagaa--tcattgagtgtcttggtgagattgg 121  Q
    ||||||||||||| || ||||||||||||  ||||||||||| | |||||||| ||||||||||  ||| |||  ||||||||||||||||||||||| |    
T  32289479 ctctagggtttagagt-ctttgattagagcttctcttgggtttggaaacatggtaaacaccttggtgagtgaaaatcattgagtgtcttggtgagatt-g 32289576  T
Q  122 gaaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac-ctcttgtattccttttgtaaagaactcatt 211  Q
    |||| ||||||||||||||| |||||| | |||||| ||||  || ||||||||||||||| || ||||||  ||||||| |||||||||||    
T  32289577 gaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaatctaatttcttgtaactcttttgtatctcttttgt-aagaactcatt 32289665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 4484592 - 4484385
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagag--aatcattgagtgtcttg------gtga 115  Q
    |||||||||||||||| ||||||||||||  ||||||||||||  |||||| | ||||||||||  ||| |  |||||||||||||||||      ||||    
T  4484592 ctctagggtttagggt-ctttgattagagcttctcttgggttgggaaacattgtaaacaccttggtgagtgtaaatcattgagtgtcttgttcttggtga 4484494  T
Q  116 gattggga--aaggggtagaaattagggtttgttcatagtgaacattgtgaa-gctaatttcttgtaa-cctcttgtattccttttgtaaagaactcatt 211  Q
     |||||||  || ||||||||||||||||| |||| | |||||| |||| || ||||||||||||||| ||| ||||||  ||||||| ||||||||| |    
T  4484493 aattgggagaaaagggtagaaattagggtt-gttctttgtgaac-ttgtcaaagctaatttcttgtaacccttttgtatctcttttgt-aagaactca-t 4484398  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  4484397 tgatagtggattg 4484385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 13121769 - 13121843
Alignment:
Q  109 ttggtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacct 183  Q
    ||||||||| |||||||  ||||||||||||||||||||| | |||| | |  ||||| ||||||||||||||||    
T  13121769 ttggtgagactgggaaaatggtagaaattagggtttgttctttgtgagcttgttgaagataatttcttgtaacct 13121843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 36205921 - 36205760
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagagaa--tcattgagtgtc-------ttggtgaga 117  Q
    ||||||||||||| ||||||||||||| ||||||||||||  |||||||| ||||||||||  ||| |||  ||||||||||||       |||||||||    
T  36205921 tagggtttagggt-ctttgattagagt-tctcttgggttgggaaacatggtaaacaccttggtgagtgaaaatcattgagtgtcttgttcattggtgaga 36205824  T
Q  118 ttggg-aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaac 181  Q
    ||||| |||  |||||||||||||| |||||| | |||||| ||||  ||||||||||||||||||    
T  36205823 ttgggaaaaatggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaac 36205760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 38312159 - 38312313
Alignment:
Q  38 ggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgt---agagagaatcattgagtgtcttg-------gtgagattggg-aaa 125  Q
    ||||||||||||||||| ||||||||||||  |||||| | | |||||||||   || || |||||||||||||||||       ||||||||||| |||    
T  38312159 ggttctttgattagagt-tctcttgggttgggaaacattgtatacaccttgtgtgagtgaaaatcattgagtgtcttgttcattggtgagattgggaaaa 38312257  T
Q  126 ggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
     ||||||||||||||| |||||| | |||||| |  |||| ||||||||||||||||    
T  38312258 tgggtagaaattaggg-ttgttctttgtgaacttgttgaaactaatttcttgtaacc 38312313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 30833252 - 30833459
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttga-aaacatgggaaacaccttgtagagag--aatcattgagtgtcttg------gtga 115  Q
    ||||||||||||||||| |||||||||||  | ||||||||||  |||||| | |||||| |||  ||| |  |||||||||||||||||      ||||    
T  30833252 ctctagggtttagggtt-tttgattagagcttatcttgggttgggaaacattgtaaacactttggtgagtgtaaatcattgagtgtcttgttcttggtga 30833350  T
Q  116 gattggga--aaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaa-cctcttgtattccttttgtaaagaactcatt 211  Q
    ||||||||  || ||||||||||||||| |||||| | |||||| ||||  ||| ||||||||||||| ||| ||||||  ||||||| ||||||||| |    
T  30833351 gattgggagaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagttaatttcttgtaacccttttgtatctcttttgt-aagaactca-t 30833446  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  30833447 tgatagtggattg 30833459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 33648176 - 33648285
Alignment:
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa-cctcttgtattccttttgtaaagaactcattt 212  Q
    ||||||| ||||  |||| |||||||||||||||| | |||| | |  ||||||||||||| ||||| ||| ||||||| | ||||||||||||||| ||    
T  33648176 gagattgagaaaatggtaaaaattagggtttgttctttgtgagcttgttgaagctaatttcctgtaacccttttgtatttc-tttgtaaagaactca-tt 33648273  T
Q  213 gatagtggattg 224  Q
    ||||| ||||||    
T  33648274 gatagcggattg 33648285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 44203536 - 44203745
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44203536 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 44203635  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44203636 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaacctcttgtatcccttttgtaaagaactcatttg 44203734  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  44203735 atagtggattg 44203745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 9036320 - 9036529
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgt--agagagaatcattgagtgtcttg 111  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  9036320 caaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaaagagagaatcattgagtgtcttg 9036419  T
Q  112 gtgagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatt 211  Q
    |||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||| ||    
T  9036420 gtgagattgggaaaagggtagaaattagggtttgttcattgtgaac-ttgtcaagctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tt 9036516  T
Q  212 tgatagtggattg 224  Q
    |||||||||||||    
T  9036517 tgatagtggattg 9036529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 40282291 - 40282490
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  40282291 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtgagattggg 40282390  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| ||||||||||||||||| |||||| |||||| ||||  || ||||||||||||||||| |||||| |||||||| |||||||| ||||||||||||    
T  40282391 aaaagggtagaaattagggttagttcattgtgaac-ttgtctaatctaatttcttgtaaccttttgtatcccttttgt-aagaactc-tttgatagtgga 40282487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 21053872 - 21054071
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagag--agaatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||    
T  21053872 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagaaaaaatcattgagtgtcttggtgagattggg 21053971  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| | |||||||||||||||||||||| |||||| ||||  || ||||||||||| ||||| |||||| |||||||| |||||||| ||||||||||||    
T  21053972 aaaagtgtagaaattagggtttgttcattgtgaac-ttgtcaaatctaatttcttgcaaccttttgtatcccttttgt-aagaactc-tttgatagtgga 21054068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 224
Target Start/End: Original strand, 9987116 - 9987314
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttggtgagattggg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  9987116 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaaaatcattgagtgtcttggtgagattggg 9987215  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttgatagtgga 221  Q
    ||| ||||||||||||||| |||||||| |||||| ||||  || ||||||||||| ||||| |||||| |||||||  ||||||||| |||||||||||    
T  9987216 aaaagggtagaaattaggg-ttgttcattgtgaac-ttgtctaatctaatttcttgcaaccttttgtatcccttttg-caagaactca-ttgatagtgga 9987311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 20622492 - 20622292
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtaga--gagaatcattgagtgtcttggtgagattggg 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||||||    
T  20622492 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagggaaaatcattgactgtcttggtgagattggg 20622393  T
Q  123 aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacctcttgtattccttttgt-aaagaactcatttgatagtgg 220  Q
    ||| ||||||||||||||| |||||||| |||||| ||||  || ||||||||||||||||| |||||| |||||| |  |||||||| |||||||||||    
T  20622392 aaaagggtagaaattaggg-ttgttcattgtgaac-ttgtcaaatctaatttcttgtaaccttttgtatcccttttttgtaagaactc-tttgatagtgg 20622296  T
Q  221 attg 224  Q
    ||||    
T  20622295 attg 20622292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 51765302 - 51765389
Alignment:
Q  25 ctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagag--aatcattgagtgtcttg 111  Q
    |||||||||||||||| ||||||||||||  |||||||||||| |||||| | ||||||||||  ||| |  |||||||||||||||||    
T  51765302 ctctagggtttagggt-ctttgattagagcttctcttgggttggaaacattgtaaacaccttggtgagtgtaaatcattgagtgtcttg 51765389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 6378603 - 6378655
Alignment:
Q  128 ggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||||||||||||  |||||||||| |||||||||| |||||||    
T  6378603 ggtagaaattagggtttgttcatgttgaacattgt-aagctaattttttgtaac 6378655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 37503722 - 37503648
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacct 183  Q
    |||||||||||||||||  ||||| ||||||||||| |||| | |||||| |  ||||||||||||||||||||||    
T  37503722 ttggtgagattgggaaaatgggtaaaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacct 37503648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 3156865 - 3156938
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||| ||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  3156865 ttggtgagattgagaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 3156938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 28220394 - 28220321
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||||||| |||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  28220394 ttggtgagattcggaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 28220321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 49918350 - 49918423
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||||||||| ||||  ||||||||||||||||| |||| | |||||| |  |||||||||||||||||||||    
T  49918350 ttggtgagattgagaaaatgggtagaaattagggtt-gttctttgtgaacttgttgaagctaatttcttgtaacc 49918423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 44455160 - 44455232
Alignment:
Q  109 ttggtgagattggg-aaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaac 181  Q
    |||||||||||||| ||| ||||||||||||||| |||||| | |||||| |  |||| |||||||||||||||    
T  44455160 ttggtgagattgggaaaatgggtagaaattaggg-ttgttctttgtgaacttgttgaaactaatttcttgtaac 44455232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 928123 - 928071
Alignment:
Q  130 tagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    ||||||||||||||||||| | |||| | |  |||||||||||||||||||||    
T  928123 tagaaattagggtttgttctttgtgagcttgttgaagctaatttcttgtaacc 928071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 12318685 - 12318618
Alignment:
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacc 182  Q
    |||||| ||||| |||||||||||||| ||||||||| | || | |  |||||||||||||||||||||    
T  12318685 gagatttggaaatgggtagaaattagg-tttgttcatggagagcttgttgaagctaatttcttgtaacc 12318618  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 13316521 - 13316447
Alignment:
Q  108 cttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaa-gctaatttcttgtaacc 182  Q
    ||||||||||||||||||  ||||||||||||||||| |||| | |||||| |||| || |||||||||||||||||    
T  13316521 cttggtgagattgggaaaaagggtagaaattagggtt-gttctttgtgaac-ttgtcaaagctaatttcttgtaacc 13316447  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 180
Target Start/End: Complemental strand, 37033241 - 37033170
Alignment:
Q  109 ttggtgagattgggaaag-gggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaa 180  Q
    |||||||||||||||||  ||||||||||||||||| |||| | |||| | |  |||||||||||||||||||    
T  37033241 ttggtgagattgggaaaatgggtagaaattagggtt-gttctttgtgagcttgttgaagctaatttcttgtaa 37033170  T

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Target: scaffold0137 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 224
Target Start/End: Original strand, 6177 - 6386
Alignment:
Q  14 caaaggggaagctctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 113  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6177 caaaggggcaactctagggtttagggttctttgattagagtatctcttgggttgaaaacatgggaaacaccttgtagagagaatcattgagtgtcttggt 6276  T
Q  114 gagattgggaaaggggtagaaattagggtttgttcatagtgaacattgtgaagctaatttcttgtaacctcttgtattccttttgtaaagaactcatttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  6277 gagattgggaaaggggtagaaattagggtttgttcatagtgaac-ttgtcaagctaatttcttgtaagcccttgtatcccttttgtaaagaactcatttg 6375  T
Q  214 atagtggattg 224  Q
    |||||||||||    
T  6376 atagtggattg 6386  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 434443 - 434606
Alignment:
Q  28 tagggtttagggttctttgattagagtatctcttgggttg-aaaacatgggaaacaccttgtagagagaa--tcattgagtgtc-------ttggtgaga 117  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| ||||||  ||| |||  ||||||||||||       |||||||||    
T  434443 tagggtttagggt-ctttgattagagt-tctcttgggttggaaaacatggtaaataccttggtgagtgaaaatcattgagtgtcttgttcattggtgaga 434540  T
Q  118 ttggg--aaaggggtagaaattagggtttgttcatagtgaacattgt-gaagctaatttcttgtaacc 182  Q
    |||||  ||| ||||||||||||||| |||||| | |||||| ||||  |||||||||||||||||||    
T  434541 ttggggaaaaagggtagaaattaggg-ttgttctttgtgaac-ttgtcaaagctaatttcttgtaacc 434606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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