View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20351_low_16 (Length: 215)
Name: NF20351_low_16
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20351_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 40853335 - 40853208
Alignment:
| Q |
73 |
aacaacggtgaaaacgatgacagtaatgcacctgatccacggggaagaaaatcacgtccaacgatactctctaacaccgacgattttccagaactctgca |
172 |
Q |
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| T |
40853335 |
aacaatggtgaaaacgatgacagtaatgcacctgatccacggggaagaaaatcacgtccaacgatactctctaacaccgacgattttccagaactctgca |
40853236 |
T |
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| Q |
173 |
tatttttcaaaaataagaaccaaaaaat |
200 |
Q |
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| T |
40853235 |
tatttttaaaaaataagaaccaaaaaat |
40853208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 40853444 - 40853385
Alignment:
| Q |
14 |
cacagacacgctaacacctatgattacttgagaaattaatatttatctgttagtcttcga |
73 |
Q |
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| T |
40853444 |
cacagacacgctaacacctatgattacttgagaaattaatatttatatgttcgtcttcga |
40853385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 11583830 - 11583766
Alignment:
| Q |
106 |
gatccacggggaagaaaatcacgtccaacgatactctctaacaccgacgattttccagaactctg |
170 |
Q |
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| T |
11583830 |
gatccacgtggtagaaaatcccttccaacaacactctctaacactgacgatttccctgaactctg |
11583766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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