View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20351_low_3 (Length: 434)
Name: NF20351_low_3
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20351_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 11225036 - 11224629
Alignment:
| Q |
19 |
cttacattcagataaacattaaacaatcaatttcagaattttgattttgtaatcagttcgcagaatatttcaacaatgtgtaactcttatactacatgca |
118 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11225036 |
cttacaatcaggtaaacattaaacaatcaatttcagaattttgattttgtaatcagttcgcagaatatttcaacaatgtgtaactcttatactacatgca |
11224937 |
T |
|
| Q |
119 |
caacatttaatgaacttaacacacccaaaagtatacttacagctatagcttttccttcttcgttcacataatttccatcattctttattaaagttgacaa |
218 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11224936 |
caacatttaatcaacttaacacacccaaaagtatacttacaactattgcttttccttcttcgttcacataatttccatcattctttattaaagttgacaa |
11224837 |
T |
|
| Q |
219 |
aataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctctgttgggata |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11224836 |
aataacctcgcttcgacatacaggccttcctaattgttgttcctaacatcataaataaaatgtaaattaagaactcatcaataacagctttgttgggata |
11224737 |
T |
|
| Q |
319 |
cataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggagtttaagcttcttacgattttcggta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11224736 |
cataaatattttgaatctgcttaccattagacgaccccttcttgcgttgctcctactaccaccagcatgtgggactttaagcttcttacgattttcggta |
11224637 |
T |
|
| Q |
419 |
ttcttctc |
426 |
Q |
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|||||||| |
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| T |
11224636 |
ttcttctc |
11224629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 11225581 - 11225433
Alignment:
| Q |
18 |
acttacattcagataaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactcttatactacat |
115 |
Q |
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||||||| ||||| | |||| ||||||||| || || |||||||||||| ||||||||| |||||| || |||| |||| ||||| ||| |||||||| |
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| T |
11225581 |
acttacaatcagaaatacatcaaacaatcagttcgcataattttgattttacaatcagttctcagaattttgtcaagaatgcgtaacacttgtactacat |
11225482 |
T |
|
| Q |
116 |
gcacaacatttaatgaacttaacacacccaaaagtatacttacagctata |
165 |
Q |
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| T |
11225481 |
gcacaacatttaatcaacc-aacacacccaaaagtatacttacagctata |
11225433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 11225389 - 11225243
Alignment:
| Q |
19 |
cttacattcagataaacattaaacaatcaattt-cagaattttgattttgtaatcagttcgcagaatatt-tcaacaatgtgtaactcttatactacatg |
116 |
Q |
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||||||||||| || |||||||||||||| || || |||||||||||| |||||||| |||||| || ||||||||||| ||| |||||| |||||| |
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| T |
11225389 |
cttacattcaggtacacattaaacaatcagttcacaaaattttgattttacaatcagtttccagaattttatcaacaatgtgcaacacttatagtacatg |
11225290 |
T |
|
| Q |
117 |
cacaacatttaatgaacttaacacacccaaaagtatacttacagctat |
164 |
Q |
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|| |||||||||| || | |||||||||||||||||| |||||||||| |
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| T |
11225289 |
cataacatttaatcaa-tcaacacacccaaaagtatatttacagctat |
11225243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 11225171 - 11225086
Alignment:
| Q |
73 |
agttcgcagaatatttcaacaatgtgtaactcttatactacatgcacaacatttaatgaacttaacacacccaaaagtatacttaca |
159 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||| ||| ||||| || |||||||||||||| |
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| T |
11225171 |
agttcgcagaatttatcaacaatgtgtaactcttatactacatgaacaacatataatcaac-caacacgccttaaagtatacttaca |
11225086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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