View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20351_low_4 (Length: 369)
Name: NF20351_low_4
Description: NF20351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20351_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 29476383 - 29476039
Alignment:
| Q |
18 |
aaaccctcagatgaacttctatcaaatataatctaatctattgaaaaccctacagagtatacacaaaacagcacaactgatacaagcatggggaaattnn |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29476383 |
aaaccctcagatgaacttctatcaaatataatctaatctatcgaaaaccctacagagtatacacaaaacagcacaactgatacaagcatggggaaattaa |
29476284 |
T |
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| Q |
118 |
nnnnnnnnnnnttcaataatccaattggaatactcaccgcattctgttccaagggaagcatctcgagaaataaatcaaggatgtcaacattggaagagtc |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29476283 |
aaagggaaaaattcaataatccaattgggatactcaccgcattctgttccaagggaagcatctcgagaaataaatcaaggatgtcaacattggaagagtc |
29476184 |
T |
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| Q |
218 |
gttcacaaaacgcgcaagcgccctaactgcaaaagtacgaaccacatggatcttgtctcgtaccctaaccttcatacattctatcacctcatcccataaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29476183 |
gttcacaaaacgcgcaagcgccctaactgcaaaagtacgaaccacatggatcttgtctcgtaccctaaccttcatacattctatcacctcatcccataaa |
29476084 |
T |
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| Q |
318 |
tcattgctcacttctgcatcatccggtaacctcagtattatctac |
362 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29476083 |
tcattgctcacttctgcatcatccggtaacctcaatattatctac |
29476039 |
T |
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