View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_high_5 (Length: 374)
Name: NF20352_high_5
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 324
Target Start/End: Complemental strand, 45306182 - 45305879
Alignment:
| Q |
21 |
atataatactgtatgtatgtattttattgagaaagaagatac-ttatatggtattatcggatcgtagaggtgaaaaaagaaagaagtattcgagttgaac |
119 |
Q |
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| T |
45306182 |
atataatactgtatgtatgtattttattgagaaagaagatacattatatggtattatcagatcgtagaggtgaaaaaagaa-gaagtattcgacttgaac |
45306084 |
T |
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| Q |
120 |
cgtacatgcatggagattggacagcaaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaa |
219 |
Q |
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| T |
45306083 |
cgtacatgcaaggagattggacagcaaaatagacaaagaaaagggtgaaagagggagcagttcggattgagaattagtgtgaaaggcacgagacgtaaaa |
45305984 |
T |
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| Q |
220 |
gagaacaataaatgagtgatgaggctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattcc |
319 |
Q |
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| T |
45305983 |
gagaacaataaatgagtgatgaggctcatgataaccctcatcatcgtcacgtcgtttttcattctctactcccaataacaaatcaatctcccagaattcc |
45305884 |
T |
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| Q |
320 |
acgct |
324 |
Q |
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||||| |
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| T |
45305883 |
acgct |
45305879 |
T |
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