View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_high_9 (Length: 202)
Name: NF20352_high_9
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 8552145 - 8552310
Alignment:
| Q |
20 |
acagacagacacagtttgcacagtctaattctatgcttttttaatttctctcctttaacggacctgttgcttgccctatttatttttatgcaatttctta |
119 |
Q |
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| T |
8552145 |
acagacagacacagtttgcacagtctaattctatgcttttttaatttctctcctttaacggacctgttgcttgccctatttatttttatgcaatttctta |
8552244 |
T |
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| Q |
120 |
gtcatatccttctgtcatttacacacacataaaatgctcagagatacataaaataaagctgtatct |
185 |
Q |
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| T |
8552245 |
gtcatatccttctgtcatttacacacacataaaatgctcagagatacataaaataaagctgtatct |
8552310 |
T |
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