View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20352_low_1 (Length: 741)

Name: NF20352_low_1
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20352_low_1
NF20352_low_1
[»] chr3 (4 HSPs)
chr3 (17-731)||(31254103-31254820)
chr3 (462-542)||(4208315-4208395)
chr3 (317-362)||(23510521-23510566)
chr3 (452-528)||(42629285-42629361)
[»] chr8 (3 HSPs)
chr8 (441-539)||(17070641-17070739)
chr8 (441-539)||(17577533-17577631)
chr8 (471-528)||(23398061-23398118)
[»] chr7 (3 HSPs)
chr7 (441-528)||(34880594-34880678)
chr7 (452-527)||(38163122-38163197)
chr7 (464-527)||(34015914-34015977)
[»] chr4 (2 HSPs)
chr4 (441-528)||(43935797-43935885)
chr4 (483-528)||(33087478-33087523)
[»] chr6 (2 HSPs)
chr6 (471-536)||(8676573-8676638)
chr6 (559-632)||(8676695-8676768)
[»] chr5 (1 HSPs)
chr5 (472-528)||(40154626-40154682)
[»] chr2 (1 HSPs)
chr2 (477-535)||(29661868-29661926)


Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 17 - 731
Target Start/End: Original strand, 31254103 - 31254820
Alignment:
Q  17 actgagaatcatattcaatttaaatatgagtccaacttttagcatatgtcaattcaataacaatcataactccatgcaac--taagcaagaagagatgtt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  31254103 actgagaatcatattcaatttaaatatgagtccaacttttagcatatgtcaattcaataacaatcataactccatgcaacactaagcaagaagagatgtt 31254202  T
Q  115 gtattaccaacactaacggcaaaacaactaataaagctagcctgatggttttttaaagctagcctgataagcaacaatgtcggaacaaccaagcgcataa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31254203 gtattaccaacactaacggcaaaacaactaataaagctagcctgatggttttttaaagctagcctgataagcaacaatgtcggaacaaccaagcgcataa 31254302  T
Q  215 ccattaactaatatttatttaaaccaaatattaaactcaaatgttctctatcaatccgacaaatttattaaccacatgaatccaattgtttgtctaagcc 314  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31254303 ccattaactaatatttatttaaaccaaatattaaactcaaaggttctctatcaatccgacaaatttattaaccacataaatccaattgtttgtctaagcc 31254402  T
Q  315 attgttggattgaaaagctacacattaatgtgaggtgaattggaactttcaagaagagagagtatgagtgnnnnnnngtgtaattgtattcaatgtaatg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  31254403 attgttggattgaaaagctacacattaatgtgaggtgaattggaactttcaagaagagagagtatgagtgaaaaaaagtgtaattgtattcaatgtaatg 31254502  T
Q  415 ttgtggtgatacaaatctgcacaacacaataaccatatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatca 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31254503 ttgtggtgatacaaatctgcacaacacaataaccatatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatca 31254602  T
Q  515 agttaatctctaaccgactaactaatgtgagcgagctggtaaccgtcaactaactaatctctaataacttatgctaatctatagtatatacatgataaca 614  Q
    |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31254603 agttaatctctaactgactaactagtgtgagctagctggtaaccgtcaactaactaatctctaataacttatgctaatctatagtatatacatcataaca 31254702  T
Q  615 acggtacaatatactagttagcaattacatcttctgttgtgcatcctctgaattgatctgatagggtgttgatcctct-gacctctctaatcctctgaac 713  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31254703 acggtacaatatactagttagcaatcgcatcttctgttgtgcatcctctaaattgatctgatagggtgttgatcctctggacctctctaatcctctgaac 31254802  T
Q  714 ccatttgatacctctctg 731  Q
    |||||| |||||||||||    
T  31254803 ccatttcatacctctctg 31254820  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 462 - 542
Target Start/End: Original strand, 4208315 - 4208395
Alignment:
Q  462 tggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaaccgactaactaatgt 542  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||| | || ||||||||||||| | |||| ||||||    
T  4208315 tggttatgctaactaattatggttacttgactagcaagtaaatcctatgaccatgttaatctctaactggctaaataatgt 4208395  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 362
Target Start/End: Complemental strand, 23510566 - 23510521
Alignment:
Q  317 tgttggattgaaaagctacacattaatgtgaggtgaattggaactt 362  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||    
T  23510566 tgttggattgaaaagctacactctaatgtgaggtgaattgcaactt 23510521  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 528
Target Start/End: Original strand, 42629285 - 42629361
Alignment:
Q  452 tatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaac 528  Q
    |||||||||  || |||||||||||| ||| ||||||||||||  |||||||||  || ||||| ||||||||||||    
T  42629285 tatatagagtggggtatgctaactaaatatggttacttgactaacaagtaaacctaatgatcaaattaatctctaac 42629361  T

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Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 539
Target Start/End: Complemental strand, 17070739 - 17070641
Alignment:
Q  441 caataaccatatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaaccgactaactaa 539  Q
    ||||||||||||||||||||||| ||||||||||| | ||| |||||||||||   ||||||||||| | || |||||||||| ||||  |||||||||    
T  17070739 caataaccatatatatagagatgattatgctaacttactatggttacttgactcacaagtaaaccctttgataaagttaatctataactaactaactaa 17070641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 539
Target Start/End: Original strand, 17577533 - 17577631
Alignment:
Q  441 caataaccatatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaaccgactaactaa 539  Q
    ||||||||||||||||||||||| ||||||||||| | ||| |||||||||||   ||||||||||| | || |||||||||| ||||  |||||||||    
T  17577533 caataaccatatatatagagatgattatgctaacttactatggttacttgactcacaagtaaaccctttgataaagttaatctataactaactaactaa 17577631  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 528
Target Start/End: Original strand, 23398061 - 23398118
Alignment:
Q  471 taactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaac 528  Q
    ||||||||||| ||||||||||||  |||||||| |||| ||||||| | ||||||||    
T  23398061 taactaattatggttacttgactaacaagtaaactctatgatcaagtaagtctctaac 23398118  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 441 - 528
Target Start/End: Complemental strand, 34880678 - 34880594
Alignment:
Q  441 caataaccatatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccc-tataatcaagttaatctctaac 528  Q
    |||||||||||||||||||||||||||||| |||    ||| |||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  34880678 caataaccatatatatagagatggttatgccaac----tatggttatttgactagcaagtaaacccttatgatcaagttaatctctaac 34880594  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 452 - 527
Target Start/End: Complemental strand, 38163197 - 38163122
Alignment:
Q  452 tatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaa 527  Q
    |||||||||  ||||||||||||||| ||| ||||||||||||  ||||||||||||| ||||||||||| |||||    
T  38163197 tatatagagtgggttatgctaactaactatggttacttgactaccaagtaaaccctatgatcaagttaatttctaa 38163122  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 527
Target Start/End: Complemental strand, 34015977 - 34015914
Alignment:
Q  464 gttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaa 527  Q
    |||||| ||||||| ||| |||||||||||   |||||||| |||| |||||||||||||||||    
T  34015977 gttatgataactaactatggttacttgactgacaagtaaactctatgatcaagttaatctctaa 34015914  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 441 - 528
Target Start/End: Original strand, 43935797 - 43935885
Alignment:
Q  441 caataacca-tatatatagagatggttatgctaactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaac 528  Q
    ||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||   |||||||| |||| || |||||||||| ||||    
T  43935797 caataaccaatatttatagaaatggttatgctaactaattatggttacttgactgtcaagtaaacgctatgattaagttaatctttaac 43935885  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 33087523 - 33087478
Alignment:
Q  483 gttacttgactagaaagtaaaccctataatcaagttaatctctaac 528  Q
    ||||||||| ||  ||||||||| ||||||||||||||||||||||    
T  33087523 gttacttgattaacaagtaaaccatataatcaagttaatctctaac 33087478  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 536
Target Start/End: Original strand, 8676573 - 8676638
Alignment:
Q  471 taactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaaccgactaac 536  Q
    ||||||| ||| ||||||||||||||||||||||  ||| | || ||||||||||||| |||||||    
T  8676573 taactaactatggttacttgactagaaagtaaactatattagcaggttaatctctaactgactaac 8676638  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 559 - 632
Target Start/End: Original strand, 8676695 - 8676768
Alignment:
Q  559 gtcaactaactaatctctaataacttatgctaatctatagtatatacatgataacaacggtacaatatactagt 632  Q
    ||||| |||| ||||||||| ||||  ||||||| |||||||||||||| ||||||||  |||| |||||||||    
T  8676695 gtcaattaacaaatctctaacaactggtgctaatttatagtatatacatcataacaactatacactatactagt 8676768  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 40154682 - 40154626
Alignment:
Q  472 aactaattatagttacttgactagaaagtaaaccctataatcaagttaatctctaac 528  Q
    |||||||||| ||||||| ||||  ||||||| | ||||||||||||||||||||||    
T  40154682 aactaattatggttacttaactaacaagtaaatcatataatcaagttaatctctaac 40154626  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 535
Target Start/End: Original strand, 29661868 - 29661926
Alignment:
Q  477 attatagttacttgactagaaagtaaaccctataatcaagttaatctctaaccgactaa 535  Q
    ||||| |||| |||||||  |||||||| |||| |||||||||||||||||| ||||||    
T  29661868 attatggttaattgactaacaagtaaactctatgatcaagttaatctctaactgactaa 29661926  T

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