View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20352_low_10 (Length: 251)
Name: NF20352_low_10
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_low_10 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 40274841 - 40274604
Alignment:
| Q |
18 |
aatttaagatgaatgaatacctttgtcagattctgattgatgtgattaacttgagataaatgaatattttttattaccc-------------gtagacca |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40274841 |
aatttaagatgaatgaatacctttgtcagattcagattgatgtgattaacttgagataaatgaatattttttattacccttatcgattacccgtagacca |
40274742 |
T |
|
| Q |
105 |
taccatgagttagtgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagatgcaaggggtaagtgggcgtttga |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |
|
|
| T |
40274741 |
gaccataagttagtgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggagggagattacatgcaaggggtaagtgagcgtttga |
40274642 |
T |
|
| Q |
205 |
ctcatgaatgtaatggttatctatgattcttctctctc |
242 |
Q |
| |
|
||||| |||||||||||||| ||||||| ||||||||| |
|
|
| T |
40274641 |
ctcataaatgtaatggttatatatgattattctctctc |
40274604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 26707023 - 26706910
Alignment:
| Q |
106 |
accatgagttagtgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagatgcaaggggtaagtgggcgtttgac |
205 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||| |||||||||| || ||||||||||| ||| ||||||||||| |||||||||| | | |||||| |
|
|
| T |
26707023 |
accatgagttagtgatgattttgatttatgtttgctcttaaggggtgtcgtaggccaacgaagggagagattagatgtaaggggtaagcgaccatttgac |
26706924 |
T |
|
| Q |
206 |
tcatgaatgtaatg |
219 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
26706923 |
tcatgattgtaatg |
26706910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 7902885 - 7902936
Alignment:
| Q |
131 |
ttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagatg |
182 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
7902885 |
ttgtgtttgcttctaaggggtatcctatgccaacgaggggagagattagatg |
7902936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 161709 - 161585
Alignment:
| Q |
40 |
ttgtcagattctgattgatgtgattaacttgagataaatgaatattttttattacccgtagaccataccatgagttagtgttgattttgatttgtgtttg |
139 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||| |||||||| |||| ||||||| | | |||||||||| ||||| ||||||||||||||||| |
|
|
| T |
161709 |
ttgtcggattcatattgttgtgattaacttgagatgaatgaatacttttgattaccctt-----aaaccatgagttggtgttaattttgatttgtgtttg |
161615 |
T |
|
| Q |
140 |
cccttaaggggtatcctaggccaacgaggg |
169 |
Q |
| |
|
| |||||| ||||||||| |||||||||| |
|
|
| T |
161614 |
ctcttaagttgtatcctagaccaacgaggg |
161585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 181
Target Start/End: Complemental strand, 34487972 - 34487909
Alignment:
| Q |
118 |
tgttgattttgatttgtgtttgcccttaaggggtatcctaggccaacgaggggggagattagat |
181 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
34487972 |
tgttgattttgatttgtatttgctcttaaggtgtatcataggccaacgaggggagagattagat |
34487909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 19789942 - 19789763
Alignment:
| Q |
43 |
tcagattctgattgatgtgattaacttgagataaatgaatattttttattacccgta-----gacc---ataccatgagttagtgttgattttgatttgt |
134 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||| ||||||| || ||| | ||||||| ||||| ||||||||| |||| |
|
|
| T |
19789942 |
tcagattcagattgatgtgattaacttgagatgaatgaata-ttttgattacccttatcgattacccttaaaccatgaattagtattgattttgtgttgt |
19789844 |
T |
|
| Q |
135 |
gtttgcccttaaggggtatcctaggccaacgaggggggagattagatgcaaggggtaagtgggcgtttgactcatgaatgtaat |
218 |
Q |
| |
|
|||||| ||| | | ||||| ||||||||||| |||||||||| ||| |||||||||| | | |||| |||||||| |||||| |
|
|
| T |
19789843 |
gtttgctctt-atgtgtatcataggccaacga--ggggagattatatgtaaggggtaagcgagtgtttcactcatgagtgtaat |
19789763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 12926234 - 12926276
Alignment:
| Q |
106 |
accatgagttagtgttgattttgatttgtgtttgcccttaagg |
148 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12926234 |
accatgagttagtgttaattttgatttgtgtttgctcttaagg |
12926276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University