View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_low_2 (Length: 482)
Name: NF20352_low_2
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 313 - 461
Target Start/End: Complemental strand, 28211175 - 28211027
Alignment:
| Q |
313 |
aatcacgtggctcccacttctctctctacccataactatagaaaccaaacaatttctctgaacttcccgtaaatgcttatcggcgatggcatcgtctcaa |
412 |
Q |
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| T |
28211175 |
aatcaagtggctcccacttctctctctacccataagtatagaaaccaaacaatttctctgaacttcccgtaaatgcttatcggcgatggcatcgtctcaa |
28211076 |
T |
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| Q |
413 |
gaaaaacgacaccgttcaatcttcgaacttccatcaaactacttcgact |
461 |
Q |
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| T |
28211075 |
gaaaaacgacaccgttcaatcttcgaacttccatcaaactacttcgact |
28211027 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 38505971 - 38506028
Alignment:
| Q |
79 |
ttctccatttctttcaaattctttttcgaaaa-gccaaaacatttcttccaatgattt |
135 |
Q |
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| T |
38505971 |
ttctccatttctttcaaattctttttcgaaaaggacaaaacatttctttcaatgattt |
38506028 |
T |
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