View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_low_4 (Length: 455)
Name: NF20352_low_4
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_low_4 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 24494480 - 24494908
Alignment:
| Q |
16 |
gcaagtgcagcagatagtacggaatacagaagcgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagcttg |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494480 |
gcaagtgtagcagatagtacggaatacagaagcgtcataggggctctacaatatttttccatgacaaggcctgacatagcctacactgtaaataagcttg |
24494579 |
T |
|
| Q |
116 |
cacaattcatgcaacatccatcatctacacactttacagccttgaaaagagttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24494580 |
cacaattcatgcaacatccatcatctacacactttacagccttgaaaagacttctttgatatctcaaagccaccatgtttcatggacttcacttgaagca |
24494679 |
T |
|
| Q |
216 |
cacttcttctcaaaatctttatgcattcagtgatgccgattgggctggaaatagagatgattatacatccacctctgcacatgatacattttatggtggt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24494680 |
cacttcttctcaaaatctttatgcattcagtgatgccgattgggctggaaatagagatgattatacatccacctctgcacatgttacattttatggtggt |
24494779 |
T |
|
| Q |
316 |
aacccaatttcttggaagtcttttaaacaaaaagccgttgcaagatcatccactgaagctgaatatagagctctagcatccgcatctgaagaagttctct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24494780 |
aacccaatttcttggaagtcttttaaacaaaaagccgttgcaagatcatccactgaagctgaatatagagctctagcatccgcatctgcagaagttctct |
24494879 |
T |
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| Q |
416 |
ggttgtcatcacttctctctgaacttcat |
444 |
Q |
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| T |
24494880 |
ggttgtcatcacttctctctgaacttcat |
24494908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 93830 - 94126
Alignment:
| Q |
16 |
gcaagtgcagcagatagtacggaatacagaagcgtcataggggctctacaatatttatccatgacaaggcctgacatagcctacactgtaaataagcttg |
115 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
93830 |
gcaagtgaagcagatagtacggaatacagaagcgtcataggggctctacaatatttgtccatgacaaggcctgacatagcctacactgtaaataagtttg |
93929 |
T |
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| Q |
116 |
cacaattcatgcaacatccatcatctacacactttacagccttgaaaagagttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagca |
215 |
Q |
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|||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
93930 |
cacagttcatgcaatatccatcatctacacactttacaaccttgaaaagacttcttcgatatctcaaagccaccatgtttcatggacttcacttgaagtg |
94029 |
T |
|
| Q |
216 |
cacttcttctcaaaatctttatgcattcagtgatgccgattgggctggaaatagagatgattatacatccacctctgcacatgatacattttatggt |
312 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
94030 |
cacttcttctcaaaatctatatgcattcagtgatgccgattgggctggaaatcgagatgattatacatccacctctgcacatgttacattttatggt |
94126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 308 - 444
Target Start/End: Original strand, 86237 - 86373
Alignment:
| Q |
308 |
atggtggtaacccaatttcttggaagtcttttaaacaaaaagccgttgcaagatcatccactgaagctgaatatagagctctagcatccgcatctgaaga |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||| | ||| |
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| T |
86237 |
atggtggtaacccaatttcttggaagtcttttaaacaaaaatttgttgcaagatcatccactgaagctgaatacagagctctagcatacgcatccgcaga |
86336 |
T |
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| Q |
408 |
agttctctggttgtcatcacttctctctgaacttcat |
444 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
86337 |
agttctctggttgtcatcacttctctctgaacttcat |
86373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 444
Target Start/End: Complemental strand, 18557123 - 18557084
Alignment:
| Q |
405 |
agaagttctctggttgtcatcacttctctctgaacttcat |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18557123 |
agaagttctctggttgtcatcacttctctctgaacttcat |
18557084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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