View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_low_5 (Length: 451)
Name: NF20352_low_5
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 68 - 433
Target Start/End: Original strand, 9586870 - 9587235
Alignment:
| Q |
68 |
tctcaattgaaccaactattttgtaaccnnnnnnnnttgaaccaactatttaggtcccatttttaagatatagctttaaactcaagaactaaatctaaaa |
167 |
Q |
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| T |
9586870 |
tctcaattgaaccaactattttgtaaccaaaaaaaattgaaccaactatttaggtcccatttttaagatattgctttaaactcaagaactaaatctaaaa |
9586969 |
T |
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| Q |
168 |
ggaaaaagtaaatgagnnnnnnnacatgaaaacaaaagcacaccaaaaagactccaccacacactatctccaaagttgaagaggggttaagggacatgtt |
267 |
Q |
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| T |
9586970 |
ggaaaaagtaaatgagtttttttacatgaaaacaaaagcacacaaaaaagactccaccacacactatctccaaagttgaagaggggttaagggacatgtt |
9587069 |
T |
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| Q |
268 |
ggcagagcatcactcagacttattattcctccaaacacacccttccatgtgctacttcctacattcctttgtccatttcttctagtccttttctgcttta |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587070 |
ggcagagcatcactcagacttattattcctccaaacacacccttccatgtgctacttcctacattcctttgtccatttcttctagtccttttctgcttta |
9587169 |
T |
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| Q |
368 |
ggattgctttagcctcttagtacataaaaaatgcagagatatgctcgtgccttcttcccccacata |
433 |
Q |
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| T |
9587170 |
ggattgctttagcctcttagtacataaaaaatgcagagatatgctcgtgccttcttcccccacata |
9587235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 9586744 - 9586803
Alignment:
| Q |
12 |
gagcagagatgagttggctcttaccatccctaatttatagttgatggaaaacttaatctc |
71 |
Q |
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| T |
9586744 |
gagcagagacgagttggctcttgccatccttaatttatagttgatggagaacttaatctc |
9586803 |
T |
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