View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_low_6 (Length: 420)
Name: NF20352_low_6
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 39754660 - 39754895
Alignment:
| Q |
19 |
accaccttactgttgctcttctctgcctcctccttcattatctgaatagttgcaagaaagcatcgcgttctgcagccttaaccgcccctatttcggcgac |
118 |
Q |
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| T |
39754660 |
accaccttactattgctcttctctgcctcctccttcattatctgaatagttgcaagaaagcatcgcgttctgcagccttaaccgcccctatttcggccac |
39754759 |
T |
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| Q |
119 |
aacttcttccctcatcatatcagcatgtgtgaatgtgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaac |
218 |
Q |
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| T |
39754760 |
aacttcttccctcaccatatcagcatgtgtgaatgtgaacctgttatatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgccac |
39754859 |
T |
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| Q |
219 |
atatttgtctaaccttttaagctccttgttaagttc |
254 |
Q |
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| T |
39754860 |
atatttgtccaaccttttaagctccttgttaagttc |
39754895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 249 - 410
Target Start/End: Original strand, 39758149 - 39758310
Alignment:
| Q |
249 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
348 |
Q |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
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| Q |
349 |
tccattaatttctccttcaactcctcaatttcggatttctttctatccaattcggattccct |
410 |
Q |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccct |
39758310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 164 - 410
Target Start/End: Original strand, 39763800 - 39764046
Alignment:
| Q |
164 |
atatgctttgcaatgtggtctccttatccatcaattcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagttcattttcttt |
263 |
Q |
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| T |
39763800 |
atatgttttgcagtgttgtctccttatccatcatttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttcttt |
39763899 |
T |
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| Q |
264 |
tttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttccttatccattaatttctcc |
363 |
Q |
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| T |
39763900 |
tttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagtttctct |
39763999 |
T |
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| Q |
364 |
ttcaactcctcaatttcggatttctttctatccaattcggattccct |
410 |
Q |
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| T |
39764000 |
ttcaactcctcaatttcggctttctttctttccaattcggactccct |
39764046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 39763626 - 39763766
Alignment:
| Q |
23 |
ccttactgttgctcttctctgcctcctccttcattatctgaatagttgcaagaaagcatcgcgttctgcagccttaaccgcccctatttcggcgacaact |
122 |
Q |
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||||||| |||||||||||||||||||||||||||||| | | |||| | ||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
39763626 |
ccttactactgctcttctctgcctcctccttcattatcttcaatttagcaata--gcatcacgttctgcagccttagccgcccctatttcggctgcaact |
39763723 |
T |
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| Q |
123 |
tcttccctcatcatatcagcatgtgtgaatgtgaacctgttat |
165 |
Q |
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|| || |||| || || ||||||||||||||||||| |||| |
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| T |
39763724 |
tcctctttcattatgccatcatgtgtgaatgtgaacctcttat |
39763766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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