View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20352_low_9 (Length: 291)
Name: NF20352_low_9
Description: NF20352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20352_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 36988944 - 36989201
Alignment:
| Q |
17 |
acaatttgcattgcatgtgcttccactagttaaaagttccaattgcaccagaaatattttgggtccccttcaagcataggattccaagaagcatatatac |
116 |
Q |
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| T |
36988944 |
acaatttgcattgcatgtgcttccactagttaaaagttccaattgcaccagaaatattttgggtccccttcaagcataggattccaagaagcatat--ac |
36989041 |
T |
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| Q |
117 |
tagtagtttcgatttagaattactacgaggccacgatcatatcatatatagttgttgtaatgtttcaaattgagtgccaattgctatccacacccactag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36989042 |
tagtagtttcgatttagaattactacgaggccacgatcatatcatatatagttgttgtaatgtttcaaattgagtgccaattgctatccacacccactag |
36989141 |
T |
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| Q |
217 |
acaagcagcaccacccaccaccaccaacnnnnnnnngttaagttatgtcagctccatcaat |
277 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36989142 |
acaagcagcaccacccaccaccaccaac-aaaaaaagttaagttatgtcagctccatcaat |
36989201 |
T |
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