View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20353_high_1 (Length: 467)
Name: NF20353_high_1
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20353_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 76 - 457
Target Start/End: Original strand, 36367825 - 36368206
Alignment:
| Q |
76 |
gtagatataatgcttttgttgatgagttaacttttattatgagcacaaatgaacatgctaaacaagaaggttggagattatggattgaaagtttgaaaca |
175 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36367825 |
gtagaaataatgcttttgttgatgagttaacttttattatgagcacaaatgaacatgctaaacaagaaggttggagattatggattgaaagtttgaaaca |
36367924 |
T |
|
| Q |
176 |
aactcaatgttatcttttggaaataaggactttgttccatggacataagcagtcnnnnnnnttatactttatttttaaacatttggcttttcttaaataa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36367925 |
aactcaatgttatcttttggaaataaggactttgttccatggacataagcagtcaaaaaaattatactttatttttaaacatttggcttttcttaaataa |
36368024 |
T |
|
| Q |
276 |
tgaatcgcataattcgacatatatttaaaaaatacattgttcaacattggaatattgggttcttcatatgtcaaatatgaacaaatcccagaattgatca |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36368025 |
tgaatcgcataattcgacatatatttaaaaaatacattgttcaacattggaatattgggttcttcatatgtcaaatatgaacaaatcccagaattgatca |
36368124 |
T |
|
| Q |
376 |
catatactagcaaaaacaatgtatcaagatactcttctaaaacctttgctcaacctacaatagaaaagttttaacatctgtg |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36368125 |
catatactagcaaaaacaatgtatcaagatactcctctaaaacctttgctcaacctacaatagaaaagttttaacatctgtg |
36368206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 36378553 - 36378643
Alignment:
| Q |
61 |
ttgcaatgaatattggtagatataatgcttttgttgatgagttaacttttattatgagcacaaatgaacatgctaaacaagaaggttggag |
151 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||| |||| |
|
|
| T |
36378553 |
ttgcaatgaatatttgtagaaataatgcttttgttgatgtgttaacttttattatgaccacaattgaacatgctaagcaagaaggtaggag |
36378643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 36378646 - 36378700
Alignment:
| Q |
171 |
aaacaaactcaatgttatcttttggaaataaggactttgttccatggacataagc |
225 |
Q |
| |
|
||||| | ||||||||||||||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
36378646 |
aaacagattcaatgttatcttttaaaaacaaggattttgttccatggacataagc |
36378700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University