View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20353_high_13 (Length: 212)

Name: NF20353_high_13
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20353_high_13
NF20353_high_13
[»] chr6 (5 HSPs)
chr6 (16-194)||(9411230-9411408)
chr6 (131-180)||(6402850-6402899)
chr6 (78-171)||(6415903-6415996)
chr6 (78-194)||(6603248-6603364)
chr6 (125-177)||(7994245-7994297)
[»] chr1 (2 HSPs)
chr1 (45-172)||(7554392-7554519)
chr1 (136-168)||(9581064-9581096)
[»] chr2 (2 HSPs)
chr2 (46-180)||(45245145-45245279)
chr2 (128-180)||(1037724-1037776)
[»] chr3 (3 HSPs)
chr3 (78-180)||(51113841-51113943)
chr3 (78-172)||(13470800-13470894)
chr3 (80-172)||(51764508-51764600)
[»] chr4 (9 HSPs)
chr4 (78-162)||(1517574-1517658)
chr4 (46-180)||(1552827-1552964)
chr4 (78-162)||(1495997-1496081)
chr4 (78-180)||(640852-640954)
chr4 (46-147)||(1489454-1489555)
chr4 (127-180)||(1524546-1524599)
chr4 (124-180)||(546896-546952)
chr4 (124-176)||(3438629-3438681)
chr4 (128-180)||(55908788-55908840)
[»] chr8 (2 HSPs)
chr8 (127-180)||(32151287-32151340)
chr8 (127-172)||(18315341-18315386)
[»] chr7 (1 HSPs)
chr7 (125-172)||(15092219-15092266)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 9411230 - 9411408
Alignment:
Q  16 aatattagcatgcactcgatgacaaagccgcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatga 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411230 aatattagcatgcactcgatgacaacgccgcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatga 9411329  T
Q  116 cagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411330 cagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtat 9411408  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 6402850 - 6402899
Alignment:
Q  131 agttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 180  Q
    |||| |||||| |||| |||||||||||||||| |||||||| |||||||    
T  6402850 agtttcaaaagcccactacaattctttgagatcacatagagtgtttcatc 6402899  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 6415903 - 6415996
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagag 171  Q
    ||||||||||  ||||||||   ||| ||||||||| |||  |||  ||||| ||||||||||| || | |||||||||||||||| |||||||    
T  6415903 ctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagag 6415996  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 6603364 - 6603248
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 177  Q
    ||||||||||  ||||||| || ||| |||||| || |||  ||| || ||| |||| |||||| ||| ||||| ||||||||||| |||||| | ||||    
T  6603364 ctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcatagactgtttc 6603265  T
Q  178 atcgaaaacacctgtat 194  Q
    |||   |||||||||||    
T  6603264 atcatcaacacctgtat 6603248  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 7994297 - 7994245
Alignment:
Q  125 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 177  Q
    ||||| |||||||||||||||  |||||||||||||||| |||| ||| ||||    
T  7994297 agtaatagttgcaaaagtccagaacaattctttgagatcacatatagtgtttc 7994245  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 7554392 - 7554519
Alignment:
Q  45 gcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcc 144  Q
    ||||||| |||||||||||| ||  ||| ||| ||||||||||| |||||||||| ||| ||||||||| ||| | || |||||||||||| ||||||||    
T  7554392 gcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcc 7554491  T
Q  145 acgacaattctttgagatctcatagagt 172  Q
    || |||| |||||||||||  |||||||    
T  7554492 accacaactctttgagatcatatagagt 7554519  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 9581064 - 9581096
Alignment:
Q  136 caaaagtccacgacaattctttgagatctcata 168  Q
    |||||||||||||||||||||||||||| ||||    
T  9581064 caaaagtccacgacaattctttgagatcacata 9581096  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 45245279 - 45245145
Alignment:
Q  46 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcca 145  Q
    ||||||||||||| | |||||   ||||||| ||||||||||  |||||||||||||| |||||| || |||   || || ||| ||||||||||| |||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  146 cgacaattctttgagatctcatagagtatttcatc 180  Q
    |||||| ||||||||||| ||| |||| |||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatc 45245145  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 1037776 - 1037724
Alignment:
Q  128 aacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 180  Q
    |||||||| ||||| |||| ||||||||||||||||  ||||||| |||||||    
T  1037776 aacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatc 1037724  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 51113943 - 51113841
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 177  Q
    ||||||||||| |||||||||| ||| ||||||  | |||   || |||||||||||||||||| |||| |||| |||| |||||| |||||||| ||||    
T  51113943 ctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttc 51113844  T
Q  178 atc 180  Q
    |||    
T  51113843 atc 51113841  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 13470894 - 13470800
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagt 172  Q
    ||||||||||  |||||||||  ||| |||||||||||||   ||  ||||| ||||||||||| |||| ||||||||||||||||  |||||||    
T  13470894 ctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagt 13470800  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 172
Target Start/End: Complemental strand, 51764600 - 51764508
Alignment:
Q  80 accacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagt 172  Q
    ||||||||  |||||||||| ||  ||||||||| |||   || |||||| ||||||||||| || | |||||||||||||||| ||||||||    
T  51764600 accacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagt 51764508  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 1517658 - 1517574
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagat 162  Q
    ||||||||||| | |||||||| ||| |||||| ||||||   || |||||| |||| ||||| |||||||||||||||||||||    
T  1517658 ctaccacatgcctaactcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgagat 1517574  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 1552964 - 1552827
Alignment:
Q  46 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgc---agtaacagttgcaaaagt 142  Q
    ||||||||||||| | ||||||| ||||||| || | |||||| |||||||||| ||  |||||| || |   |||||    |||||||| ||||||||     
T  1552964 caaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagctgcaaaagc 1552865  T
Q  143 ccacgacaattctttgagatctcatagagtatttcatc 180  Q
    ||||||||||||||||| ||| ||| |||| |||||||    
T  1552864 ccacgacaattctttgatatcacattgagtgtttcatc 1552827  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 1496081 - 1495997
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagat 162  Q
    ||||||||||| | |||||||| ||| ||| || ||||||   || ||||||  ||||||||| |||||||||||||||||||||    
T  1496081 ctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagat 1495997  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 180
Target Start/End: Original strand, 640852 - 640954
Alignment:
Q  78 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 177  Q
    ||||||||||  |||||||||| | | | |||| ||||||   || ||||||||| |||||||| ||||| |||||||||||| || | |||||| ||||    
T  640852 ctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttc 640951  T
Q  178 atc 180  Q
    |||    
T  640952 atc 640954  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 1489555 - 1489454
Alignment:
Q  46 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcca 145  Q
    ||||||||||||| | |||||   ||| ||| ||| ||||||| |||||||||| ||| ||||||||  ||| | || |||||| ||||||||||| |||    
T  1489555 caaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagccca 1489456  T
Q  146 cg 147  Q
    ||    
T  1489455 cg 1489454  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 1524599 - 1524546
Alignment:
Q  127 taacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 180  Q
    ||||||||||||||| ||||||||| ||| |||||||  ||||||| |||||||    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatc 1524546  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 546896 - 546952
Alignment:
Q  124 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 180  Q
    |||||||| || |||||| |||| |||| ||||||||||| |||||||| |||||||    
T  546896 cagtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatc 546952  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 3438681 - 3438629
Alignment:
Q  124 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtattt 176  Q
    |||||||||||||||||| |||| |||| ||||||||||  ||| ||||||||    
T  3438681 cagtaacagttgcaaaagcccacaacaactctttgagattacatggagtattt 3438629  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 55908840 - 55908788
Alignment:
Q  128 aacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 180  Q
    |||||||| ||||| |||| ||||||||||||||||  ||||||| |||||||    
T  55908840 aacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatc 55908788  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 32151287 - 32151340
Alignment:
Q  127 taacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 180  Q
    ||||||||||||||| |||| |||| ||||||||||| |||||||| |||||||    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatc 32151340  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 18315386 - 18315341
Alignment:
Q  127 taacagttgcaaaagtccacgacaattctttgagatctcatagagt 172  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||||||    
T  18315386 taacagttgcaaaagcctacgacaactctttgagatcacatagagt 18315341  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 15092266 - 15092219
Alignment:
Q  125 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagt 172  Q
    ||||| ||||||||||| |||| |||||||||||||||| ||||||||    
T  15092266 agtaatagttgcaaaagcccacaacaattctttgagatcgcatagagt 15092219  T

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