View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20353_low_10 (Length: 269)
Name: NF20353_low_10
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20353_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 32717899 - 32717649
Alignment:
| Q |
1 |
ttaaccagaaaaacattggtcttaaacaatatgacaacttaacnnnnnnnnnnnncaatatgacaacatgaaattctgcaagaacttgaaaattaagaaa |
100 |
Q |
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| T |
32717899 |
ttaaccagaaaaacattggtcttaaacaatatgacaacttaacaaaaacaaaaaacaatatgacaacatgaaattctgcaagaacttgaaaattaagaaa |
32717800 |
T |
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| Q |
101 |
ctatattctaaaccacggtatacataccatcggaagcaactattgaaattccaaatatttatgacaactaatcctcatcactacttccatagcttaggca |
200 |
Q |
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| T |
32717799 |
ctatattctaaaccacggtatacataccattggaagcaactattgaaattccaaatatttatgacaactaatcctcatcactacttccatagcttaggca |
32717700 |
T |
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| Q |
201 |
caaagataacagtgcaccattagtatttgtagaacgtttgacattagaggt |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32717699 |
caaagataacagtgcaccattagtatttgtagaacgtttgacattagaggt |
32717649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 1843973 - 1843813
Alignment:
| Q |
56 |
caatatgacaacatgaaattctgcaagaacttgaaaattaagaaactatattctaaaccacggtatacataccatcggaagcaactattgaa-------- |
147 |
Q |
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| T |
1843973 |
caatatgacaacatgaaatt-tgcaaaaacttgaaaactaagaatctatgttctgaatcacaatatacaatccattggaagcaactgttgaatacatagt |
1843875 |
T |
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| Q |
148 |
-attccaaatatttatgacaactaatcctcatcactacttccatagcttaggcacaaagata |
208 |
Q |
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| T |
1843874 |
catcccaactgtttatgaaaactattcctcgtcactacttccatagctttgacacagagata |
1843813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 29820101 - 29820245
Alignment:
| Q |
56 |
caatatgacaacatgaaattctgcaagaacttgaaaattaagaaactatattctaaaccacggtatacataccatcggaagcaactattgaa-------- |
147 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||| || ||| |||| |||| || ||| |||||| |||| |||||||||| ||||| |
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| T |
29820101 |
caatatgacaacatgaaatt-tgcaaaaagttgaaaactaggaatctatgttctgaatcacaatatacaatccattggaagcaactgttgaatatatagt |
29820199 |
T |
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| Q |
148 |
-attccaaatatttatgacaactaatcctcatcactacttccatag |
192 |
Q |
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||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
29820200 |
cattccaattgtttatgacaactattcctcatcactacttccatag |
29820245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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