View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20353_low_12 (Length: 247)
Name: NF20353_low_12
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20353_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 232
Target Start/End: Complemental strand, 9419399 - 9419174
Alignment:
| Q |
7 |
ataatgaagatgttcatctccaattcacatgacaaccctaaaagaaaatattgataatgcacaacctttcatcttcaattcacctaggtgtctaaaggat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9419399 |
ataatgaagatgttcatctccaattcacatgacaaccccgaaagaaaatattgataatgcacaacctttcatcttcaattcacctaggtgtctaaaggat |
9419300 |
T |
|
| Q |
107 |
cagtctcacgaaaaactagttgttgtaaccaaataatcacttttgaagttgccaatataggatctatagtgtgttggggactaacagcatgacccccctt |
206 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9419299 |
cagtctcacgagaaacaagttgttgtaaccaaataatcacttttgaagttgccaatataggatctatagtgtgttggggactaacagcatgacccccctt |
9419200 |
T |
|
| Q |
207 |
tccacttatttttgcttcaaagaagc |
232 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9419199 |
tccacttatttttgcttcaaagaagc |
9419174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 34594711 - 34594928
Alignment:
| Q |
15 |
gatgttcatctccaattcacatgacaaccctaaaagaaaatattgataatgcacaacctttcatcttcaattcacctaggtgtctaaaggatcagtctca |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||| |||||||| | ||||||||||||||||| |||| |
|
|
| T |
34594711 |
gatgttcatctccaattcacatgacaatcctaaaagaagatattgaaaatgtccaacctttcatctccaattcacttgggtgtctaaaggatcagcctca |
34594810 |
T |
|
| Q |
115 |
cgaaaaactagttgttgtaaccaaataatcacttttgaagttgccaatataggatctatagtgtgttggggactaacagcatgacccccctttccactta |
214 |
Q |
| |
|
||| |||| || |||||| | | ||||||||| || |||| || ||||||| |||||||| |||||| ||| || |||||||||| || ||||||||| |
|
|
| T |
34594811 |
cgagaaacaagatgttgtgagccaataatcacattggaagctgtcaatatatgatctataaagtgttgaggaatagcagcatgacctccttttccacttc |
34594910 |
T |
|
| Q |
215 |
tttttgcttcaaagaagc |
232 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
34594911 |
tttttacttcaaagaagc |
34594928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 31559136 - 31558965
Alignment:
| Q |
7 |
ataatgaagatgttcatctccaattcacatgacaaccctaaaagaaaatattgataatgcacaacctttcatcttcaattcacctaggtgtctaaaggat |
106 |
Q |
| |
|
||||||| ||||||||||||||||| | || |||||||||||| | |||||| ||||| ||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
31559136 |
ataatgaggatgttcatctccaatttatattacaaccctaaaacgagatattggaaatgcccaacctttcatctacaattcacatgggtgtctaaaggat |
31559037 |
T |
|
| Q |
107 |
cagtctcacgaaaaactagttgttgtaaccaaataatcacttttgaagttgccaatataggatctatagtgt |
178 |
Q |
| |
|
||| ||||| | |||| ||||||||||| | ||||||||| || |||| || |||||||| |||||||||| |
|
|
| T |
31559036 |
cagcctcacaagaaacaagttgttgtaagctaataatcacattggaagctggcaatatagattctatagtgt |
31558965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 42827807 - 42827864
Alignment:
| Q |
16 |
atgttcatctccaattcacatgacaaccctaaaagaaaatattgataatgcacaacct |
73 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| | |||||| ||| |||||||| |
|
|
| T |
42827807 |
atgttcatatccaattcacttgacaaccctaaaaggagatattggaaatacacaacct |
42827864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 43204456 - 43204528
Alignment:
| Q |
103 |
ggatcagtctcacgaaaaactagttgttgtaaccaaataatcacttttgaagttgccaatataggatctatag |
175 |
Q |
| |
|
|||||| |||| ||| |||| | ||||||||| | || |||||| || ||||||||||||||||| ||||||| |
|
|
| T |
43204456 |
ggatcaatctcgcgagaaacaatttgttgtaagctaacaatcacattggaagttgccaatatagggtctatag |
43204528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 20208077 - 20208158
Alignment:
| Q |
24 |
ctccaattcacatgacaaccctaaaagaaaatattgataatgcacaacctttcatcttcaattcacctaggtgtctaaaggat |
106 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||| |||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
20208077 |
ctccgattcacatgacaaccctaaaaggagatattgaaaatggccaacctttcatctccaattcacct-ggtgtctaaaggat |
20208158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 5071274 - 5071353
Alignment:
| Q |
151 |
gaagttgccaatataggatctatagtgtgttggggactaacagcatgacccccctttccacttatttttgcttcaaagaa |
230 |
Q |
| |
|
|||| ||| ||||| |||||||||| ||||| ||| || | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5071274 |
gaagctgctaatatgggatctatagattgttgaggaatagctgcatgacctccctttccacttatttttgcttcaaagaa |
5071353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 36900336 - 36900396
Alignment:
| Q |
15 |
gatgttcatctccaattcacatgacaaccctaaaagaaaatattgataatgcacaaccttt |
75 |
Q |
| |
|
||||||||||||||||| | |||| ||||||||||| | ||||||| |||| |||||||| |
|
|
| T |
36900336 |
gatgttcatctccaatttaaatgaaaaccctaaaaggagatattgaaaatgtccaaccttt |
36900396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 1134548 - 1134581
Alignment:
| Q |
10 |
atgaagatgttcatctccaattcacatgacaacc |
43 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
1134548 |
atgaggatgttcatctccaattcacatgacaacc |
1134581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University