View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20353_low_5 (Length: 326)
Name: NF20353_low_5
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20353_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 37338243 - 37337952
Alignment:
| Q |
20 |
gatccgagttgcgctgtttccaatttctcttgcagatcaagagttcgcagaggaacagataaatgtccaattgaagacattgtgctcctcatatatagtc |
119 |
Q |
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| T |
37338243 |
gatccgagttgcgctatttccaatttctcttgcagatcaagagttcgcagaggaacagataaatgtccaattgaagacattgtgctcctcatatatagtt |
37338144 |
T |
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| Q |
120 |
ggggacttgccacaattctcttagcagatgctcccattatatatgctgtattcttaggtttcatattaacgtggctttttataggagacaaatgtttgtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37338143 |
cgggacttgccacaattctcttagcagatgctcccattatatatgctgtattcttaggtttcatattaacgtgactttttataggagacaaatgtttgtt |
37338044 |
T |
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| Q |
220 |
gtgagtatatgaaatgggtttagcagactttgaaaacaaagtttcattttgaaatcttttcattgctgtatttcccactttatgagcctttg |
311 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37338043 |
gtgagtaactgaaatgggtttagcagactttgaaaacaaagtttcattttgaaatcttttcattgttgtatttcccactttatgagcctttg |
37337952 |
T |
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