View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20353_low_6 (Length: 302)
Name: NF20353_low_6
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20353_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 7471744 - 7472030
Alignment:
| Q |
1 |
aatcatgcaaaatatttttacactgtcagaacatagtcattaagctcaaattgttgtatatacatatatatgccgatgtatttatttcatcacacttagc |
100 |
Q |
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| T |
7471744 |
aatcatgcaaaatatttttacactgtcagaacatagtcattaagctcaaattgttgtatatacatatatacgccgatgtatttatttcatcacacttagc |
7471843 |
T |
|
| Q |
101 |
taactgctgatttaagaattaaaacaaatttgatattaatcaaaaacaaatcgcgaaaagctaagcttactcacccaagttgatcaatagctataactct |
200 |
Q |
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| T |
7471844 |
taactgctgatttaagaattaaaacaaatttgatattaatcaaaaacaaatcgcgaaaagctaagcttactcacccaagttgatcaatagctataactct |
7471943 |
T |
|
| Q |
201 |
gaaacgcgaggcaagagcatcgaaattgcgaaagaagaaaccctgtgatgcagcatatccgtgaaccattaccaatgtaggagaatc |
287 |
Q |
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| T |
7471944 |
gaaacgcgaggcaagagcatcgaaattgcgaaagaagaaaccctgtgatgcagcatatccgtgaaccattaccaatgtaggagaatc |
7472030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 287
Target Start/End: Original strand, 52872785 - 52872899
Alignment:
| Q |
173 |
acccaagttgatcaatagctataactctgaaacgcgaggcaagagcatcgaaattgcgaaagaagaaaccctgtgatgcagcatatccgtgaaccattac |
272 |
Q |
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||||||||||||||| ||| || | ||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||| || |
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| T |
52872785 |
acccaagttgatcaacagcaatgattctgaaacgagaggcgagagcatcaaaattgcgaaagaagaaaccctgagaagcagcgtatccatgaaccataac |
52872884 |
T |
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| Q |
273 |
caatgtaggagaatc |
287 |
Q |
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| T |
52872885 |
aagtgtaggagaatc |
52872899 |
T |
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