View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20353_low_9 (Length: 271)

Name: NF20353_low_9
Description: NF20353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20353_low_9
NF20353_low_9
[»] chr4 (35 HSPs)
chr4 (31-260)||(36407941-36408170)
chr4 (31-260)||(36413064-36413293)
chr4 (139-260)||(36377054-36377177)
chr4 (132-260)||(36400488-36400616)
chr4 (132-260)||(36436558-36436688)
chr4 (31-112)||(42915104-42915185)
chr4 (132-260)||(36371291-36371419)
chr4 (60-109)||(31275280-31275329)
chr4 (147-219)||(36420948-36421019)
chr4 (61-108)||(5234360-5234407)
chr4 (31-103)||(51389421-51389493)
chr4 (61-108)||(3286953-3287000)
chr4 (64-110)||(4896387-4896433)
chr4 (60-110)||(24772805-24772855)
chr4 (60-102)||(30778159-30778201)
chr4 (60-102)||(46173671-46173713)
chr4 (61-110)||(525858-525907)
chr4 (67-112)||(47998734-47998779)
chr4 (63-108)||(51296066-51296111)
chr4 (64-108)||(28480427-28480471)
chr4 (64-108)||(28481301-28481345)
chr4 (64-108)||(28482176-28482220)
chr4 (64-111)||(31658057-31658104)
chr4 (60-111)||(55927118-55927169)
chr4 (64-110)||(1033286-1033332)
chr4 (64-102)||(10250542-10250580)
chr4 (223-260)||(36430081-36430118)
chr4 (70-111)||(36792477-36792518)
chr4 (61-102)||(37297055-37297096)
chr4 (63-102)||(2613511-2613551)
chr4 (64-108)||(15596534-15596578)
chr4 (63-103)||(23690368-23690408)
chr4 (70-110)||(31240793-31240833)
chr4 (60-108)||(38952823-38952871)
chr4 (60-112)||(51717169-51717221)
[»] chr2 (13 HSPs)
chr2 (31-109)||(11164264-11164342)
chr2 (64-111)||(3091879-3091926)
chr2 (64-111)||(36133112-36133159)
chr2 (31-111)||(13711166-13711246)
chr2 (64-103)||(12600186-12600225)
chr2 (60-109)||(12962520-12962569)
chr2 (64-102)||(2464275-2464313)
chr2 (74-111)||(11980797-11980834)
chr2 (64-93)||(39285991-39286020)
chr2 (60-113)||(43650431-43650484)
chr2 (61-102)||(44287464-44287505)
chr2 (67-103)||(25801705-25801741)
chr2 (64-108)||(29795574-29795618)
[»] chr5 (19 HSPs)
chr5 (64-112)||(2117525-2117573)
chr5 (60-111)||(33567125-33567176)
chr5 (31-109)||(11306801-11306879)
chr5 (61-103)||(12349920-12349962)
chr5 (64-112)||(9403651-9403699)
chr5 (70-108)||(12661835-12661873)
chr5 (64-102)||(39595412-39595450)
chr5 (64-101)||(43482503-43482540)
chr5 (64-103)||(125230-125269)
chr5 (70-108)||(10232644-10232682)
chr5 (64-110)||(20719902-20719948)
chr5 (61-103)||(42532252-42532294)
chr5 (64-108)||(9714024-9714068)
chr5 (61-109)||(17990349-17990397)
chr5 (64-112)||(19127262-19127310)
chr5 (64-108)||(24431507-24431551)
chr5 (64-112)||(29402320-29402368)
chr5 (61-97)||(32536950-32536986)
chr5 (61-113)||(33243625-33243677)
[»] chr1 (17 HSPs)
chr1 (64-111)||(49453615-49453662)
chr1 (64-108)||(2362507-2362551)
chr1 (61-112)||(37843320-37843371)
chr1 (61-103)||(27687416-27687458)
chr1 (64-98)||(36418217-36418251)
chr1 (64-109)||(51571564-51571609)
chr1 (60-111)||(14002627-14002679)
chr1 (64-108)||(31290097-31290141)
chr1 (67-110)||(28716284-28716327)
chr1 (70-113)||(48872835-48872878)
chr1 (64-102)||(11460932-11460970)
chr1 (61-103)||(12034357-12034399)
chr1 (60-110)||(31427844-31427894)
chr1 (64-102)||(33676039-33676077)
chr1 (61-99)||(50141833-50141871)
chr1 (64-112)||(22389411-22389458)
chr1 (64-108)||(40610367-40610411)
[»] chr6 (9 HSPs)
chr6 (61-111)||(32253916-32253966)
chr6 (64-111)||(2582800-2582847)
chr6 (64-108)||(32853033-32853077)
chr6 (64-111)||(1897824-1897871)
chr6 (67-112)||(2241711-2241756)
chr6 (71-112)||(10628425-10628466)
chr6 (61-108)||(30733144-30733191)
chr6 (71-109)||(1434564-1434602)
chr6 (61-110)||(30714808-30714857)
[»] chr7 (18 HSPs)
chr7 (60-109)||(6353863-6353912)
chr7 (60-103)||(32933681-32933724)
chr7 (64-112)||(8792485-8792533)
chr7 (64-108)||(12142022-12142066)
chr7 (64-112)||(48866815-48866863)
chr7 (60-111)||(43445541-43445592)
chr7 (61-103)||(21839027-21839069)
chr7 (64-102)||(32428206-32428244)
chr7 (60-110)||(37351877-37351927)
chr7 (64-108)||(10591290-10591334)
chr7 (64-103)||(7077647-7077686)
chr7 (70-111)||(7807199-7807240)
chr7 (64-109)||(33684818-33684863)
chr7 (72-108)||(2741781-2741817)
chr7 (64-108)||(5978717-5978761)
chr7 (64-112)||(46651810-46651858)
chr7 (64-111)||(47945121-47945169)
chr7 (64-111)||(47950551-47950599)
[»] chr3 (24 HSPs)
chr3 (61-109)||(7231894-7231942)
chr3 (64-108)||(29706041-29706085)
chr3 (61-112)||(49196831-49196882)
chr3 (64-109)||(46953087-46953132)
chr3 (70-111)||(108574-108615)
chr3 (64-113)||(11173588-11173637)
chr3 (61-110)||(37303518-37303567)
chr3 (70-111)||(51650501-51650542)
chr3 (70-102)||(32687854-32687886)
chr3 (70-113)||(44365175-44365218)
chr3 (61-103)||(51343413-51343456)
chr3 (64-110)||(20380776-20380822)
chr3 (61-103)||(44695147-44695189)
chr3 (64-102)||(46473266-46473304)
chr3 (75-113)||(55344179-55344217)
chr3 (70-111)||(31997947-31997988)
chr3 (71-108)||(32457642-32457679)
chr3 (63-108)||(34733183-34733228)
chr3 (61-102)||(45711463-45711504)
chr3 (63-112)||(52727333-52727382)
chr3 (64-108)||(19418049-19418093)
chr3 (64-108)||(28300535-28300579)
chr3 (65-109)||(47849809-47849853)
chr3 (70-110)||(51464153-51464193)
[»] scaffold0115 (1 HSPs)
scaffold0115 (64-110)||(15076-15122)
[»] scaffold0036 (1 HSPs)
scaffold0036 (64-110)||(18141-18187)
[»] chr8 (22 HSPs)
chr8 (64-109)||(21273598-21273643)
chr8 (31-102)||(7678837-7678908)
chr8 (65-108)||(9046960-9047003)
chr8 (61-111)||(295681-295731)
chr8 (64-114)||(26294314-26294364)
chr8 (64-114)||(26307571-26307621)
chr8 (64-110)||(43403922-43403968)
chr8 (65-103)||(44672127-44672165)
chr8 (64-109)||(1179514-1179559)
chr8 (63-108)||(5359475-5359520)
chr8 (64-109)||(28927819-28927864)
chr8 (64-107)||(12668747-12668790)
chr8 (64-103)||(18538516-18538555)
chr8 (64-111)||(23258170-23258217)
chr8 (71-110)||(40413250-40413289)
chr8 (64-102)||(27673003-27673041)
chr8 (64-108)||(8142903-8142948)
chr8 (61-102)||(22719446-22719487)
chr8 (61-102)||(31249548-31249589)
chr8 (31-103)||(42689890-42689960)
chr8 (64-112)||(5502500-5502548)
chr8 (70-110)||(30925541-30925581)
[»] scaffold0057 (1 HSPs)
scaffold0057 (63-108)||(39016-39061)
[»] scaffold0508 (1 HSPs)
scaffold0508 (61-112)||(11421-11472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (71-110)||(36147-36186)
[»] scaffold0449 (1 HSPs)
scaffold0449 (71-112)||(7976-8017)
[»] scaffold0204 (1 HSPs)
scaffold0204 (60-111)||(27473-27525)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 36408170 - 36407941
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttttacaataccataacgtgac 130  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36408170 gtttttaactaatgaaaagagaaaaaaaagaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttttgcaataccataacgtgac 36408071  T
Q  131 ttacttgtttctcaagaacctctagaaatgtctacaaactaaattccaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatctttcagc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36408070 ttacttgtttctcaagaacctctagaaatgtctacaaactaaatttcaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatcttttagc 36407971  T
Q  231 gagcactgatagtagtttctgttacttcat 260  Q
    ||||||||||||||||||||||||||||||    
T  36407970 gagcactgatagtagtttctgttacttcat 36407941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 36413293 - 36413064
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttttacaataccataacgtgac 130  Q
    |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36413293 gtttttaactaatgaaaagagaaaaaaaagaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttttgcaataccataacgtgac 36413194  T
Q  131 ttacttgtttctcaagaacctctagaaatgtctacaaactaaattccaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatctttcagc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36413193 ttacttgtttctcaagaacctctagaaatgtctacaaactaaatttcaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatcttttagc 36413094  T
Q  231 gagcactgatagtagtttctgttacttcat 260  Q
    ||||||||||||||||||||||||||||||    
T  36413093 gagcactgatagtagtttctgttacttcat 36413064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 36377177 - 36377054
Alignment:
Q  139 ttctcaagaacctcta--gaaatgtctacaaactaaattccaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatctttcagcgagcac 236  Q
    ||||||| ||||||||  |||||||||||||||| |||||| | || ||| ||| |||||||||||||||||||||||||||||  |||| |||||||||    
T  36377177 ttctcaaaaacctctaaagaaatgtctacaaactcaattccgatgtaaaaatatgaaccaaaaatttacatatttgattaaggtggcttttagcgagcac 36377078  T
Q  237 tgatagtagtttctgttacttcat 260  Q
    |||| ||||||||||||| |||||    
T  36377077 tgatggtagtttctgttaattcat 36377054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 36400616 - 36400488
Alignment:
Q  132 tacttgtttctcaagaacctctagaaatgtctacaaactaaattccaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatctttcagcg 231  Q
    |||||||||||||| ||||||||| |||||||||||||| |||||| | || ||| ||| ||| |||||||||||||||||||||| ||| |||| ||||    
T  36400616 tacttgtttctcaaaaacctctaggaatgtctacaaactcaattccgatgtaaaactatgaacaaaaaatttacatatttgattaatgtagcttttagcg 36400517  T
Q  232 agcactgatagtagtttctgttacttcat 260  Q
    |||  |||| |||||||| ||||||||||    
T  36400516 agcgatgatggtagtttcagttacttcat 36400488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 36436688 - 36436558
Alignment:
Q  132 tacttgtttctcaagaacctctagaaatgtctacaaactaaattccaaggtgaaa--gtataaaccaaaaatttacatatttgattaaggtatctttcag 229  Q
    |||||||||||||| ||| |||||||||||||||||||| |||||  |    |||  |||| |||| |||  ||| |||||||||||||||| |||| ||    
T  36436688 tacttgtttctcaacaacttctagaaatgtctacaaactcaattctgataaaaaaaagtatgaaccgaaacattaaatatttgattaaggtagcttttag 36436589  T
Q  230 cgagcactgatagtagtttctgttacttcat 260  Q
    ||||||||||| ||||||||||||| |||||    
T  36436588 cgagcactgatggtagtttctgttaattcat 36436558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 42915185 - 42915104
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||| |||||||||||        ||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42915185 gtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactctttt 42915104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 36371419 - 36371291
Alignment:
Q  132 tacttgtttctcaagaacctctagaaatgtctacaaactaaattccaaggtgaaagtataaaccaaaaatttacatatttgattaaggtatctttcagcg 231  Q
    ||||||||||| |||||||| | |||| ||||| ||||| |||||  |    ||||||| ||||||||| |||||||||  ||||||||| |||||||||    
T  36371419 tacttgtttcttaagaacctattgaaacgtctataaacttaattctgatagaaaagtatgaaccaaaaaattacatattcaattaaggtagctttcagcg 36371320  T
Q  232 agcactgatagtagtttctgttacttcat 260  Q
    |||||| |||||||| || |||| |||||    
T  36371319 agcactaatagtagtctcggttaattcat 36371291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 31275280 - 31275329
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  31275280 gaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactct 31275329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 36421019 - 36420948
Alignment:
Q  147 aacctctagaaatgtctacaaactaaattccaaggtgaaagtataaaccaaaaatttacatatttgattaagg 219  Q
    ||||||||  ||||||| |||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  36421019 aacctctatgaatgtctgcaaactcaattccaaggtgcaagtataaacc-aaaatttacatattagattaagg 36420948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 108
Target Start/End: Complemental strand, 5234407 - 5234360
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  5234407 aaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 5234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 51389421 - 51389493
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    |||||| ||||||||||||||        ||| ||||||||||||||||||||||| ||||||||||||||||    
T  51389421 gttttttactaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcac 51389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 3286953 - 3287000
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||    
T  3286953 aaattgtcacaaaagttgtgtgaaatggttgttcaaatatcaccactc 3287000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 4896433 - 4896387
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||||    
T  4896433 ttgtcacaaaagttgtttcaaatagatgttcaaatatcactactctt 4896387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 24772805 - 24772855
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||||||||| |||||| |||||| | |||||||||||||||||||||    
T  24772805 gaaattgtcacaagagttgtctcaaatggatgttcaaatatcaccactctt 24772855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 30778201 - 30778159
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  30778201 gaaattgtcataaaagttatatcaaatagttgttcaaatatca 30778159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 46173671 - 46173713
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  46173671 gaaattgtcacaaaagttgtatcaaatggttattcaaatatca 46173713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 525858 - 525907
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||||||||||||||| ||||||| |||||||| |||||| ||||||    
T  525858 aaattgtcacaaaagttgtctcaaataattgttcaattatcacgactctt 525907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 47998734 - 47998779
Alignment:
Q  67 tcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||    
T  47998734 tcacaaaagttgtatcaaatgattgttcaaatatcactactctttt 47998779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 51296111 - 51296066
Alignment:
Q  63 attgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  51296111 attgtcacaaaagttgtttcaaatagatgttcaaatatcactactc 51296066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 28480471 - 28480427
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||    
T  28480471 ttgtcacaatagttgtctcaaatagttgttcaaatatcactactc 28480427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 28481345 - 28481301
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||    
T  28481345 ttgtcacaatagttgtctcaaatagttgttcaaatatcactactc 28481301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 28482220 - 28482176
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||||    
T  28482220 ttgtcacaatagttgtctcaaatagttgttcaaatatcactactc 28482176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 31658057 - 31658104
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  31658057 ttgtcacaaaagctgtatcaaatggttgttcaaatatcgctactcttt 31658104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 55927118 - 55927169
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||||||||| |||| |||||| | |||||||||||||| |||||||    
T  55927118 gaaattgtcacaaaaattgtctcaaatggatgttcaaatatcactactcttt 55927169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 1033286 - 1033332
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  1033286 ttgtcacaaaagttgtttaaaatggttgttcaaatatcactactctt 1033332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 10250542 - 10250580
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  10250542 ttgtcacaaaagttgtaaaaaatagttgttcaaatatca 10250580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 36430118 - 36430081
Alignment:
Q  223 ctttcagcgagcactgatagtagtttctgttacttcat 260  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  36430118 ctttcagcgagcactgatggtagtttctgttagttcat 36430081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 36792477 - 36792518
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||| |||| |||||||||||||||| |||||||    
T  36792477 caaaagttgtatgaaatggttgttcaaatatcactactcttt 36792518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 37297096 - 37297055
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  37297096 aaattgtcacaaaagttgtaaaaaatggttgttcaaatatca 37297055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Complemental strand, 2613551 - 2613511
Alignment:
Q  63 attgtcacaaaagttgt-atcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  2613551 attgtcacaaaagttgttatcaaatggttgttcaaatatca 2613511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 15596534 - 15596578
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||| | |||| |||||||||||||||| ||||    
T  15596534 ttgtcacaaaagttgtttaaaatggttgttcaaatatcactactc 15596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 23690368 - 23690408
Alignment:
Q  63 attgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    |||||||||||| |||| |||||||| ||||||||||||||    
T  23690368 attgtcacaaaaattgtttcaaatagatgttcaaatatcac 23690408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 31240793 - 31240833
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  31240793 caaaagttgtatgaaatggttgttcaaatatcactactctt 31240833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 38952823 - 38952871
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||| |||||||| |||||||||||| ||||| ||||||||| ||||    
T  38952823 gaaattatcacaaaaattgtatcaaataattgtttaaatatcactactc 38952871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 51717221 - 51717169
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||||||| ||||||| ||| ||  ||||||||||||||| ||||||||    
T  51717221 gaaattgtcacataagttgtctcatatgattgttcaaatatcactactctttt 51717169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 11164342 - 11164264
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    ||||||||| |||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11164342 gtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 11164264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 3091879 - 3091926
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||    
T  3091879 ttgtcacaaaagttgtatcaaataattgttcaaatatcactactcttt 3091926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 36133112 - 36133159
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||    
T  36133112 ttgtcacaaaagttgtatgaaatagttgttcaaatatcactactcttt 36133159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 13711166 - 13711246
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||| |||||||||||        ||| |||||||||||||||||  ||||||||||||||||||||| |||||||    
T  13711166 gtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtacaaaatagttgttcaaatatcactactcttt 13711246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 12600186 - 12600225
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  12600186 ttgtcacaaaagttgtatgaaatagttgttcaaatatcac 12600225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 12962520 - 12962569
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||| |||||| || ||||||||||||||||||||||||| |||||    
T  12962520 gaaattgttacaaaatttatatcaaatagttgttcaaatatcactactct 12962569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 2464275 - 2464313
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  2464275 ttgtcacaaaagttgtatcaaatggatgttcaaatatca 2464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 11980797 - 11980834
Alignment:
Q  74 agttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  11980797 agttgtaccaaaaagttgttcaaatatcaccactcttt 11980834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 93
Target Start/End: Original strand, 39285991 - 39286020
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgtt 93  Q
    ||||||||||||||||||||||||||||||    
T  39285991 ttgtcacaaaagttgtatcaaatagttgtt 39286020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 43650484 - 43650431
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttta 113  Q
    |||||||||||| ||||||||||||||  ||||| ||||||||  |||||||||    
T  43650484 gaaattgtcacataagttgtatcaaatgattgtttaaatatcattactctttta 43650431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 44287464 - 44287505
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||| ||||||||||||||  ||||||||||||||||||||    
T  44287464 aaattatcacaaaagttgtaaaaaatagttgttcaaatatca 44287505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 25801741 - 25801705
Alignment:
Q  67 tcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  25801741 tcacaaaagttgtctcaaattgttgttcaaatatcac 25801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 29795574 - 29795618
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||    
T  29795574 ttgtcacaaaagttgtttcaaattgatgttcaaatatcactactc 29795618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 2117573 - 2117525
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2117573 ttgtcacaaaagttgtatcaaatagttgttcaaatatcactactctttt 2117525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 33567176 - 33567125
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||||    
T  33567176 gaaattgtcacaaaagttgtatcaaatggttgttcatatatcactactcttt 33567125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 11306801 - 11306879
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    ||||||||| |||||||||||        ||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  11306801 gtttttaaccaatgaaaagagagaaaaaagaagttgtctcaaaagttgtatcaaatagttgttcaaatatcactactct 11306879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 12349920 - 12349962
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  12349920 aaattatcacaaaagttgtatcaaatagttgttcaaatatcac 12349962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 9403651 - 9403699
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||||    
T  9403651 ttgtcacaaaagttgtatcaaatggttgtttaaatatcactactctttt 9403699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 12661873 - 12661835
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  12661873 caaaagttgtatgaaatagttgttcaaatatcaccactc 12661835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 39595412 - 39595450
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  39595412 ttgtcacaaaagttgtatcaaatggttgttcaaatatca 39595450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 101
Target Start/End: Original strand, 43482503 - 43482540
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatc 101  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  43482503 ttgtcacaaaaattgtatcaaatagttgttcaaatatc 43482540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 125230 - 125269
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||| ||||||||||||||||| ||||||||||||||||    
T  125230 ttgtcgcaaaagttgtatcaaatggttgttcaaatatcac 125269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 10232644 - 10232682
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  10232644 caaaagttgtataaaatagttgttcaaatatcactactc 10232682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 20719948 - 20719902
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||||    
T  20719948 ttgtcacaaaagttgtctcaaatggatgttcaaatatcactactctt 20719902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 42532252 - 42532294
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    |||||||||||||| || ||| |||||||||||||||||||||    
T  42532252 aaattgtcacaaaaattatatgaaatagttgttcaaatatcac 42532294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 9714068 - 9714024
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||||||| || |||||||||||||||| ||||    
T  9714068 ttgtcacaagagttgtatcatatggttgttcaaatatcactactc 9714024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 17990349 - 17990397
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    ||||||||||||||||||| |||||  |||||| ||||||||| |||||    
T  17990349 aaattgtcacaaaagttgtctcaaacggttgtttaaatatcactactct 17990397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 19127262 - 19127310
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||| |||||||||| | |||| |||||||||||||||| ||||||||    
T  19127262 ttgtcgcaaaagttgtttaaaatggttgttcaaatatcactactctttt 19127310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 24431551 - 24431507
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||| |||||| |||||||||||||||| ||||    
T  24431551 ttgtcacaatagttgtctcaaatggttgttcaaatatcactactc 24431507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 29402320 - 29402368
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||| ||||||| ||| || |||||||||| ||||||||||||||    
T  29402320 ttgtcacataagttgtctcacatggttgttcaaacatcaccactctttt 29402368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 32536950 - 32536986
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaa 97  Q
    ||||| ||||||||||||| |||||||||||||||||    
T  32536950 aaattatcacaaaagttgtctcaaatagttgttcaaa 32536986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 33243677 - 33243625
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttta 113  Q
    ||||||||||||||||| | | |||| |||||||||||||||  |||||||||    
T  33243677 aaattgtcacaaaagttatctgaaatggttgttcaaatatcattactctttta 33243625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 49453615 - 49453662
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  49453615 ttgtcacaaaagttgtatcaaatagttgttcaaatatcactactcttt 49453662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 2362507 - 2362551
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
T  2362507 ttgtcacaaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 37843371 - 37843320
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||| || || ||||||||||||||||||||||||| ||||||||    
T  37843371 aaattgtcacacaaattatatcaaatagttgttcaaatatcactactctttt 37843320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 27687458 - 27687416
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||| ||||||||||||||||||| |||||||||||||||||    
T  27687458 aaattatcacaaaagttgtatcaaacagttgttcaaatatcac 27687416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 36418217 - 36418251
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaat 98  Q
    |||||||||||||||||||||||||||||||||||    
T  36418217 ttgtcacaaaagttgtatcaaatagttgttcaaat 36418251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 51571564 - 51571609
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||||||||||||| |||| |||||||||||||||| |||||    
T  51571564 ttgtcacaaaagttgtattaaatggttgttcaaatatcacaactct 51571609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 14002679 - 14002627
Alignment:
Q  60 gaaattgtcacaaaagttgt-atcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||| ||||||||| | |||||||||||||||||||||| |||||||    
T  14002679 gaaattgtcataaaagttgttagcaaatagttgttcaaatatcactactcttt 14002627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 31290141 - 31290097
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||| | |||| |||||||||||||||||||||    
T  31290141 ttgtcacaaaagttgtgtgaaatggttgttcaaatatcaccactc 31290097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 28716284 - 28716327
Alignment:
Q  67 tcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||    
T  28716284 tcacaaaagttgtctcaaatggttgttcaaatatcactactctt 28716327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 48872878 - 48872835
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactctttta 113  Q
    |||||||||||| |||| |||||||||||||||| |||||||||    
T  48872878 caaaagttgtatgaaatggttgttcaaatatcactactctttta 48872835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 11460932 - 11460970
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  11460932 ttgtcaaaaaagttgtatcaaattgttgttcaaatatca 11460970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 12034357 - 12034399
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||    
T  12034357 aaattatcacaaaagttgtatcaaatagtcgttcaaatgtcac 12034399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 31427894 - 31427844
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||| ||||||||| | ||||| ||||||||||||||| ||||||    
T  31427894 gaaattgtcataaaagttgtttaaaataattgttcaaatatcactactctt 31427844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 33676039 - 33676077
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  33676039 ttgtcacaaaagttttattaaatagttgttcaaatatca 33676077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 50141871 - 50141833
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaata 99  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  50141871 aaattgtcacaaaagttgtctcatatagttgttcaaata 50141833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 22389458 - 22389411
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||||||| ||||||| |||||||||||||||  ||||||||    
T  22389458 ttgtcacaaaagttg-atcaaatggttgttcaaatatcattactctttt 22389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 40610367 - 40610411
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||| |||||| | |||||||||||||| ||||    
T  40610367 ttgtcacaaaagttgtctcaaatggatgttcaaatatcactactc 40610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 32253916 - 32253966
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  32253916 aaattgtcacaaaagttgtaccaaatagttgttcaaatatcactactcttt 32253966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 2582800 - 2582847
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  2582800 ttgtcacaaaagttgtttcaaatagatgttcaaatatcaccactcttt 2582847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 32853077 - 32853033
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||    
T  32853077 ttgtcacaaaaattgtatcaaatagttgttcaaatatcactactc 32853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 1897824 - 1897871
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||||    
T  1897824 ttgtcacaaaagttgtttcaaatagatgttcaaatatcactactcttt 1897871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 2241756 - 2241711
Alignment:
Q  67 tcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||    
T  2241756 tcacaaaagttgtatcaaatggttgttcaaatatcactattctttt 2241711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 10628425 - 10628466
Alignment:
Q  71 aaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  10628425 aaaagttgtatcaaatagttgttcaaatatcactcctctttt 10628466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 30733144 - 30733191
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||||||||||| |||||| |||||| ||||||||| ||||    
T  30733144 aaattgtcacaaaagttgtctcaaatggttgtttaaatatcactactc 30733191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 109
Target Start/End: Complemental strand, 1434602 - 1434564
Alignment:
Q  71 aaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  1434602 aaaaattgtatcaaatagttgttcaaatatcactactct 1434564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 30714808 - 30714857
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||||||||||||| | ||||||  ||||||||||||||| ||||||    
T  30714808 aaattgtcacaaaagttatctcaaatgattgttcaaatatcactactctt 30714857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 6353863 - 6353912
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  6353863 gaaattgtcacaaaagttgtatcaaatagtttttcaaatatcactactct 6353912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 32933681 - 32933724
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  32933681 gaaattgtcacaaaagttgtatcaaataattgttcaaatatcac 32933724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 8792533 - 8792485
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||||    
T  8792533 ttgtcacaaaagttgtatcaaatggttgttcaaatatcattactctttt 8792485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 12142022 - 12142066
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  12142022 ttgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 12142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 48866863 - 48866815
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||||||||||| |||||||| |||||||||||||| ||||||||    
T  48866863 ttgtcacaaaagttgtttcaaatagatgttcaaatatcactactctttt 48866815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 43445541 - 43445592
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
T  43445541 gaaattgtcacaaaaattgtatcaaatgattgttcaaatatcactactcttt 43445592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 21839069 - 21839027
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  21839069 aaattgttacaaaaattgtatcaaatagttgttcaaatatcac 21839027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 32428206 - 32428244
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  32428206 ttgtcataaaagttgtatcaaatagttgttcaaatatca 32428244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 37351927 - 37351877
Alignment:
Q  60 gaaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||||| ||||||||  ||||||||||||||| ||||||    
T  37351927 gaaattgtcacaaaagttatatcaaatgattgttcaaatatcactactctt 37351877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 10591290 - 10591334
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||    
T  10591290 ttgtcacaaaagttgtctcaaatggttgttcaaatatcactactc 10591334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 7077686 - 7077647
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  7077686 ttgtcacaaaagttgtttaaaatagttgttcaaatatcac 7077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 7807199 - 7807240
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||| |||| |||||||||||||||| |||||||    
T  7807199 caaaagttgtatgaaatggttgttcaaatatcactactcttt 7807240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 33684818 - 33684863
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||||||||||| ||| ||||||||||||||| ||| |||||    
T  33684818 ttgtcacaaaagttgtttcatatagttgttcaaataacactactct 33684863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 2741817 - 2741781
Alignment:
Q  72 aaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  2741817 aaagttgtctcaaatagttgtttaaatatcaccactc 2741781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 5978717 - 5978761
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||||||| || |||||||||||||||| ||||    
T  5978717 ttgtcacaagagttgtatcatatggttgttcaaatatcactactc 5978761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 46651810 - 46651858
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||| | |||||||| || |||||||||||||||| ||||||||    
T  46651810 ttgtcacaagaattgtatcatatggttgttcaaatatcactactctttt 46651858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 47945121 - 47945169
Alignment:
Q  64 ttgtcacaaaagttgtatcaaat-agttgttcaaatatcaccactcttt 111  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||    
T  47945121 ttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactcttt 47945169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 47950551 - 47950599
Alignment:
Q  64 ttgtcacaaaagttgtatcaaat-agttgttcaaatatcaccactcttt 111  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||    
T  47950551 ttgtcccaaaagttgtatcaaaagagttgttcaaatatcactactcttt 47950599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 7231942 - 7231894
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  7231942 aaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactct 7231894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 29706041 - 29706085
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  29706041 ttgtcacaaaagttgtatcaaatagttgttcaaatatcactactc 29706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 49196831 - 49196882
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  49196831 aaattgtcacaaaagttttatcaaataattgttcaaatatcacaactctttt 49196882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 46953087 - 46953132
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||    
T  46953087 ttgtcataaaagttgtatcaaatagttgttcaaatatcactactct 46953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 108574 - 108615
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  108574 caaaagttgtatgaaatagttgttcaaatatcactactcttt 108615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 11173588 - 11173637
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttta 113  Q
    ||||||||||||||||||||||| ||||||||||||| |  |||||||||    
T  11173588 ttgtcacaaaagttgtatcaaatggttgttcaaatattattactctttta 11173637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 37303518 - 37303567
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||| ||||||    
T  37303518 aaattgtcacaaaagttgtctcatatagttgttcaaataacactactctt 37303567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 51650501 - 51650542
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||||| |||| ||||||||||||||||||||||||    
T  51650501 caaaagttgtatgaaatggttgttcaaatatcaccactcttt 51650542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 32687886 - 32687854
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||||||||||||||||||||||||||||||    
T  32687886 caaaagttgtatcaaatagttgttcaaatatca 32687854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 44365218 - 44365175
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactctttta 113  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||    
T  44365218 caaaaattgtataaaatggttgttcaaatatcaccactctttta 44365175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 51343456 - 51343413
Alignment:
Q  61 aaattgtcacaaaagttgt-atcaaatagttgttcaaatatcac 103  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||    
T  51343456 aaattgtcacaaaagttgtcatcaaatagatgttcaaatatcac 51343413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 20380822 - 20380776
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||| | |||| |||||||||||||||| ||||||    
T  20380822 ttgtcacaaaagttgtttaaaatggttgttcaaatatcactactctt 20380776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 44695147 - 44695189
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||    
T  44695147 aaattatcacaaaagttgtatgaaatggttgttcaaatatcac 44695189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 46473266 - 46473304
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  46473266 ttgtcataaaagttgtatcaaatggttgttcaaatatca 46473304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 55344217 - 55344179
Alignment:
Q  75 gttgtatcaaatagttgttcaaatatcaccactctttta 113  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  55344217 gttgtatgaaatagttgttcaaatatcactactctttta 55344179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 31997947 - 31997988
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    |||||||||| |||||| |||||||||||||||| |||||||    
T  31997947 caaaagttgtctcaaatggttgttcaaatatcactactcttt 31997988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 32457679 - 32457642
Alignment:
Q  71 aaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  32457679 aaaaattgtatcaaatagttgttcaaatatcactactc 32457642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 34733228 - 34733183
Alignment:
Q  63 attgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||| |||||||||| |||||||| |||||||||||||| ||||    
T  34733228 attgtctcaaaagttgtttcaaatagatgttcaaatatcactactc 34733183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 45711463 - 45711504
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  45711463 aaattgtcacaaaagttgtaaaaaattgttgttcaaatatca 45711504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 52727382 - 52727333
Alignment:
Q  63 attgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||||||| |||| |||||||| |||| ||||||||| ||||||||    
T  52727382 attgtcacaaaaattgtttcaaatagatgtttaaatatcactactctttt 52727333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 19418093 - 19418049
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||| |||||| | |||||||||||||||||||    
T  19418093 ttgtcacaagagttgtctcaaatggatgttcaaatatcaccactc 19418049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 28300579 - 28300535
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||| |||||||||| || |||||||||||||||| ||||    
T  28300579 ttgtcacaagagttgtatcatatggttgttcaaatatcactactc 28300535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 47849809 - 47849853
Alignment:
Q  65 tgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||| |||||| |||||||| |||||||||||||| |||||    
T  47849809 tgtcacaagagttgtttcaaatagatgttcaaatatcactactct 47849853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 51464193 - 51464153
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  51464193 caaaagttgtataaaatggttgttcaaatatcactactctt 51464153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 15122 - 15076
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  15122 ttgtcacaaaagttgtaccaaatagttgttcaaatatcactactctt 15076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 18141 - 18187
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||    
T  18141 ttgtcataaaagttgtatcaaatagttgttcaaatatcactactctt 18187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 21273643 - 21273598
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||    
T  21273643 ttgtcacaaaagttgtatgaaatagttgttcaaatatcactactct 21273598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 7678837 - 7678908
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||| |||||||||||        ||| |||| ||||||||||||||||||||||||||||||||||    
T  7678837 gtttttaaccaatgaaaagagagaaaaaagaagttgttacaaaagttgtatcaaatagttgttcaaatatca 7678908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 9047003 - 9046960
Alignment:
Q  65 tgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||| |||||||||||||||||||||||||||| ||||    
T  9047003 tgtcacaaaaattgtatcaaatagttgttcaaatatcactactc 9046960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 295681 - 295731
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||||||||||| | ||||||||||||||||||| ||| |||||||    
T  295681 aaattgtcacaaaagttatctcaaatagttgttcaaataacactactcttt 295731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 26294314 - 26294364
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttttac 114  Q
    |||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  26294314 ttgtcacaaaagttgtttcaaatatatgttcaaatatcactactcttttac 26294364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 26307571 - 26307621
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttttac 114  Q
    |||||||||||||||| |||||||  |||||||||||||| ||||||||||    
T  26307571 ttgtcacaaaagttgtttcaaatatatgttcaaatatcactactcttttac 26307621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 43403922 - 43403968
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  43403922 ttgtcacgaaagttgtctcaaatagttgttcaaatatcactactctt 43403968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 44672165 - 44672127
Alignment:
Q  65 tgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  44672165 tgtcacaaaagttgtatcaaataattgttcaaatatcac 44672127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 1179514 - 1179559
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||    
T  1179514 ttgtcacaaaagttatatcaaatagttgtttaaatatcactactct 1179559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 5359475 - 5359520
Alignment:
Q  63 attgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  5359475 attgtcacaaaagttgtttcaaatagatgttcaaatatcactactc 5359520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 28927819 - 28927864
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactct 109  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  28927819 ttgtcacaaaaattttatcaaatggttgttcaaatatcaccactct 28927864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 12668790 - 12668747
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccact 107  Q
    |||||||||||||| | |||| ||||||||||||||||||||||    
T  12668790 ttgtcacaaaagttttttcaattagttgttcaaatatcaccact 12668747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 18538516 - 18538555
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  18538516 ttgtcacaaaagttgaaccaaatagttgttcaaatatcac 18538555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 23258170 - 23258217
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||||| |||| |||||| |||||||||||||||| |||||||    
T  23258170 ttgtcacaaaaattgtttcaaatggttgttcaaatatcactactcttt 23258217  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 40413289 - 40413250
Alignment:
Q  71 aaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  40413289 aaaagttgtatcaaatggttgttcaaatatcactactctt 40413250  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 27673003 - 27673041
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  27673003 ttgtcacaaaagttatatctaatagttgttcaaatatca 27673041  T

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Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 8142948 - 8142903
Alignment:
Q  64 ttgtcacaaaagttgt-atcaaatagttgttcaaatatcaccactc 108  Q
    |||||||||||||||| |||||||| |||||||||||||| |||||    
T  8142948 ttgtcacaaaagttgtcatcaaataattgttcaaatatcatcactc 8142903  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 22719487 - 22719446
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  22719487 aaattgtcacaaaagttgtaaaaaatggttgttcaaatatca 22719446  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 31249548 - 31249589
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatca 102  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  31249548 aaattgtcacaaaagttgtaaaaaatggttgttcaaatatca 31249589  T

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Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 42689890 - 42689960
Alignment:
Q  31 gtttttaactaatgaaaagagnnnnnnnngaaattgtcacaaaagttgtatcaaatagttgttcaaatatcac 103  Q
    ||||||||| |||||||||||        ||||||||||||||||||  | ||||||||||||||||||||||    
T  42689890 gtttttaaccaatgaaaagagagaaaaaagaaattgtcacaaaagtt--aacaaatagttgttcaaatatcac 42689960  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 5502500 - 5502548
Alignment:
Q  64 ttgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    ||||||||||| || ||||||||  ||||||||||||||| ||||||||    
T  5502500 ttgtcacaaaaattatatcaaatgattgttcaaatatcactactctttt 5502548  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 30925581 - 30925541
Alignment:
Q  70 caaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  30925581 caaaagttgtataaaatggttgttcaaatatcactactctt 30925541  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 39016 - 39061
Alignment:
Q  63 attgtcacaaaagttgtatcaaatagttgttcaaatatcaccactc 108  Q
    ||||||||||||||||| |||||||| |||||||||||||| ||||    
T  39016 attgtcacaaaagttgtttcaaatagatgttcaaatatcactactc 39061  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 11472 - 11421
Alignment:
Q  61 aaattgtcacaaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||||||  |||||||||| | ||||||||||||||||||||| ||||||||    
T  11472 aaattgtatcaaaagttgtctaaaatagttgttcaaatatcactactctttt 11421  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 110
Target Start/End: Original strand, 36147 - 36186
Alignment:
Q  71 aaaagttgtatcaaatagttgttcaaatatcaccactctt 110  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  36147 aaaagttgtatcaaatggttgttcaaatatcactactctt 36186  T

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Target: scaffold0449 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 7976 - 8017
Alignment:
Q  71 aaaagttgtatcaaatagttgttcaaatatcaccactctttt 112  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  7976 aaaaattgtatcaaataattgttcaaatatcactactctttt 8017  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 27473 - 27525
Alignment:
Q  60 gaaattgtcac-aaaagttgtatcaaatagttgttcaaatatcaccactcttt 111  Q
    ||||||||||| |||| |||||| |||| |||||||||||||||| |||||||    
T  27473 gaaattgtcactaaaaattgtatgaaatggttgttcaaatatcactactcttt 27525  T

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