View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_high_15 (Length: 244)
Name: NF20354_high_15
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 5024854 - 5025090
Alignment:
| Q |
1 |
tctaatgattctttgtatctgtgcattgcttcaagaatctgtttaagggctctaagatcctttccggattttttgaactctagatccgccatcctttttt |
100 |
Q |
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| T |
5024854 |
tctaatgattctttgtatctgtgcattgcttcaagaatctgtttaagggctctaagatcctttccggattttttgaactctagatccgccatcctttttt |
5024953 |
T |
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| Q |
101 |
caatttcaccatagaccgagagggaccgatttgaggcctttgttgaaggttcgttattcttggaaaattgtgaatatggtgtctcatttgtgattgaacc |
200 |
Q |
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| T |
5024954 |
caatttcaccatagaccgagagggaccgatttgaggcctttgttgaaggttcgttattcttggaaaattgtgaatatggtgtctcatttgtgattgaacc |
5025053 |
T |
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| Q |
201 |
atccctcctagattgaagcatgtttgtccctttgctt |
237 |
Q |
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| T |
5025054 |
atccctcctagattgaagcatgtttgtccctttgctt |
5025090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 4559307 - 4559403
Alignment:
| Q |
17 |
atctgtgcattgcttcaagaatctgtttaagggctctaagatcctttccggattttttgaactctagatccgccatccttttttcaatttcaccata |
113 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||| ||| |||||| |||||||| ||||| |
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| T |
4559307 |
atctctgcattgcttcaagaatctgtttaagtgctctaagatcctttccggactttttgaactcgagttcccccaaccttttctcaatttcgccata |
4559403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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