View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20354_high_6 (Length: 346)
Name: NF20354_high_6
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 5024877 - 5024558
Alignment:
| Q |
12 |
gcacagatacaaagaatcattagatactgcaagtgatcaggcttcaaattctccgtatgacaatacgagtaatagtagtgtcggtgaaagcttgaatgta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024877 |
gcacagatacaaagaatcattagatactgcaagtgatcagacttcaaattctccgtatgacaatacgagtaatagtagtgtcggtgaaagcttgaatgta |
5024778 |
T |
|
| Q |
112 |
caaagtccaagaacacggcagaagaacccgacatctgtcacagctgagaggttgagttcaactcagggtagtaaatctccaattgtcatcatgaaaccaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5024777 |
caaagtccaagaacacggcagaagaacccgacatctgtcacagctgagaggttgagttcaactcagggtagtaaatctccaattgtcatcatgaaaccaa |
5024678 |
T |
|
| Q |
212 |
caaaggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatcatcaagtaacaaggtttaccgcagtgatcctactgatgg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5024677 |
caaaggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatcatcaggtaacaaggtttaccgcagtgatcctactgatgg |
5024578 |
T |
|
| Q |
312 |
aatgtcagttgtcaagcttg |
331 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5024577 |
aatgtcagttgtcaagcttg |
5024558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 4559172 - 4559078
Alignment:
| Q |
178 |
ggtagtaaatctccaattgtcatcatgaaaccaacaaaggttgcaagaaaaacaaataattcttcttcaccagaaatgccaattcatggtaaatc |
272 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| || | |||||| | |||||| || |||| ||||| ||||||||| || |||||| |
|
|
| T |
4559172 |
ggtagtaaattaccaattgtcatcacgaaaccaacaaaagtgactagaaaagccaataatcctccttctacagaactgccaattcctgataaatc |
4559078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University