View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_1 (Length: 538)
Name: NF20354_low_1
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Original strand, 42913016 - 42913532
Alignment:
| Q |
18 |
cttttatatttgagctgagtttatgtgaactatttgtatttgataatttgcactctttttagtaccnnnnnnngtatgagtaaacgtgattaagggacat |
117 |
Q |
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| T |
42913016 |
cttttatatttgagctgagtttatgtgaactatttgtatgtgataatttgcactctttttagtaccaaaaaaagtacgtgtaaacgtgattaagggacat |
42913115 |
T |
|
| Q |
118 |
tactcaaagaaagatattgcaacaatcttacatatttattataacaaa-caaacaaagccaaaatgcataatcatacaaaggaacatattactgaaaagg |
216 |
Q |
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| T |
42913116 |
tactcaaagaaagatattgtaacaatcttacatgtttattataacaaaacaaacaaagccaaaatgcataatcatacaaaggaacatattactgaaaagg |
42913215 |
T |
|
| Q |
217 |
ttacattaggtaaattcaaatgggtcatcacatcacccatacatttagctactggtagtaagtactatagctattttattacaccactaaacaagtaaca |
316 |
Q |
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| T |
42913216 |
ttacattaggtaaattcaaatgggtcatcacatcacccatacatttagctactagtagtaagtactatagctattttattacaccactaaacaagtaaca |
42913315 |
T |
|
| Q |
317 |
agaagaagacatt---caacaagacataatgaaacttaacttaaagtgattaatgtaattaaccactctctctaattaaacacttccataaacttcacac |
413 |
Q |
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|||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913316 |
agaaaaagacattaaacaacaagacatagtgaaacttaacttaaagtgattaatgtaattaaccactctctctaattaaacacttccataaacttcacac |
42913415 |
T |
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| Q |
414 |
attttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttgcatcattgttggtgatcatttcttcctctttcttttcatcc |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42913416 |
attttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttgcatcattgttggtgatcacttcttcctctttcttttcatcc |
42913515 |
T |
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| Q |
514 |
atggcttcttctctctc |
530 |
Q |
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| T |
42913516 |
atggcgtcttctttctc |
42913532 |
T |
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