View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_10 (Length: 278)
Name: NF20354_low_10
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 54880801 - 54881053
Alignment:
| Q |
13 |
gagatgaagatccaatgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcataccatcc |
112 |
Q |
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| T |
54880801 |
gagatgaagatccaatgtgatgtgtgtgagaaagctgaggctactatgttctgtccttcagatgaagctgctctttgccatggatgtgatcataccatcc |
54880900 |
T |
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| Q |
113 |
accgtgccaacaagctcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaataca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54880901 |
accgtgccaacaagctcgcaaccaaacacactcgtttttctcttgttcacctcaactccaaagactaccctctttgtgatatctgtcaagtatgaataca |
54881000 |
T |
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| Q |
213 |
ccgtcgcatctggatcttttaatattttaaagaatctcatgagtcagatgtga |
265 |
Q |
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| T |
54881001 |
ccgtcgcatctggatcttttaatattttaaagaatctcatgagtcagatgtga |
54881053 |
T |
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