View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_11 (Length: 275)
Name: NF20354_low_11
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 6415170 - 6414920
Alignment:
| Q |
19 |
ggattcacttcatatttccttcaaattcacaacatcaatgtctttaacaatagtactattttttaaactattgtcacgtacataaattattactacattc |
118 |
Q |
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| T |
6415170 |
ggattcacttcatatttccttcaaattcacaacatcaatgtctttaacaatagtactattttttaaactattgtcacgtacataaattattactacattc |
6415071 |
T |
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| Q |
119 |
aagctgactatactgtttgtacattaattaattttgatccctgagtgaggttgctttgataactttgtgaaatttcttagtagtatcatccaagaatcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6415070 |
aagctgactatactgtttgtacattaattaattttggtccttgagtgaggttgctttgataactttgtgaaatttcttagtagtatcatccaagaatcac |
6414971 |
T |
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| Q |
219 |
catgagttgtcaaaaacattaacaagaacaagttgtatcctttcatctctc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6414970 |
catgagttgtcaaaaacattaacaagaacaagttgtatcctttcatatctc |
6414920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 23287917 - 23287974
Alignment:
| Q |
212 |
gaatcaccatgagttgtcaaaaacattaacaagaacaagttgtatcctttcatctctc |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
23287917 |
gaatcaccatgagttgtcaaaaacattaacaagaacaaattgtatcctttcatatctc |
23287974 |
T |
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