View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_12 (Length: 262)
Name: NF20354_low_12
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 11824839 - 11825076
Alignment:
| Q |
10 |
ataatacttcattgtgctaccttcaatattaatatcgttgatgggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatt |
109 |
Q |
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| T |
11824839 |
ataatacttcattgtgctaccttcaatattaatatcgttgatgggttcttgtatttttaaatgttcattgtagtgcatgtgtattgtcatatgtatcatt |
11824938 |
T |
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| Q |
110 |
tttcataccttg-ttttttatgccattacttaggtatgtttgttggtactttggatgcacaatacttacttttttaataatgcagttggtgtttggtcta |
208 |
Q |
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| T |
11824939 |
tttcataccttgtttttttatgccattacttagatatgtttgttggtactttggatgcacaatacttacttttttaataatgcaattggtgtttggtcta |
11825038 |
T |
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| Q |
209 |
tcttcacaatattattcacaataatgcagttggtattg |
246 |
Q |
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| T |
11825039 |
tcttcacaatatcattcacaataatgccgttggtattg |
11825076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 10353490 - 10353642
Alignment:
| Q |
10 |
ataatacttcattgtgctaccttcaatattaatatcgttgatgggttcttgtatttttaaatgttcattgtagtgtatgtgtattgtcatatgtatcatt |
109 |
Q |
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||||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| |||| | |
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| T |
10353490 |
ataatacttcattatgctaccttcaagat------cgttgatgggttcttttatttttaaatgttcaatgtagtatatgtgtattgtcatatgcatcagt |
10353583 |
T |
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| Q |
110 |
tttcataccttgttttttatgccattacttaggtatgtttgttggtactttggatgcacaatactt |
175 |
Q |
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| T |
10353584 |
tttcataacttg-------tagcactacttagatatgtttgttggtactttggatgcacaatactt |
10353642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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