View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_13 (Length: 251)
Name: NF20354_low_13
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 42913563 - 42913813
Alignment:
| Q |
1 |
ttcttctgtcttaacattgtccttagtttcaggctcagctaccacattctcatccttaacaacatgttctgtctcagattcttcagctggtttttcttga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| ||| |
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| T |
42913563 |
ttcttctgtcttaacattgtccttagtttcaggctcagctaccacattctcatccttaacaacatttactgtctcagactcttcagctggtttttcctga |
42913662 |
T |
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| Q |
101 |
acaacctcaacaacagaatcaccgttttctttcgtttcctcaacattaaccgaatcaacattttcttttgtttcctcgacaggttcctttgtctcggttt |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||| |
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| T |
42913663 |
acagcctcaacaacagaatcaccgttttctttcgtttcctcaacattaagagaattaccgttttcttttgtttcctcgacaggttcctttgtctcggttt |
42913762 |
T |
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| Q |
201 |
gttcttccttctttgttgcctcttctgtatctttcgcaggaacaacaactt |
251 |
Q |
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||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
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| T |
42913763 |
gttcttccttctttgtttcctcttctgtatctttcacaggcacaacaactt |
42913813 |
T |
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