View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20354_low_2 (Length: 491)
Name: NF20354_low_2
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 129 - 474
Target Start/End: Original strand, 31623419 - 31623754
Alignment:
| Q |
129 |
gcggtgcaaataggaatccttttgtaacttgaactagaagtgttgcgaattcctcctcttgaaaatctatctgaaactgaaactgaaactgaaacttgat |
228 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31623419 |
gcggtgcaaatagtaatccttttgtaacttgaactagaagtgt--cgaattcctcctcttgaaaatctatctgaaactgaaact------------tgat |
31623504 |
T |
|
| Q |
229 |
tctttgaaagttgttagaagttagaaga----aatggaagattgcattaaaatccgaagatatgaagaagttcttacatctaatgatttcgagtctctca |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31623505 |
tctttgaaagttgttagaagttagaagaaagaaatggaagattgcattaaaatccgaagatatgaagaagttcttacatctaatgatttcgagtctctca |
31623604 |
T |
|
| Q |
325 |
tcgaagctcaaaacgttcccgctgtaatcaaacaaacaacactatcagattcttctttcaattattacttgcatcactaattactaatatttgaattttc |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31623605 |
tcgaagctcaaaacgttcccgctgtaatcaaacaaacaacactatcagattcttctttcaattattacttgcatcactaattactaatatttgaattttc |
31623704 |
T |
|
| Q |
425 |
taacctaaaaggttctatgcggttgcaccaagaattggatagctttctct |
474 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31623705 |
taacctaaaaggttctatgcggttgcaccaagaattggacagctttctct |
31623754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 31623294 - 31623357
Alignment:
| Q |
5 |
taggggattcttgcagagtataagcaaaaattgagttggaaacgcagtataacaagtgtgtatt |
68 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31623294 |
taggggattcttggagagtataagcaaaaattgagttggaaacgccgtataacaagtgtgtatt |
31623357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University