View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_4 (Length: 401)
Name: NF20354_low_4
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 9238364 - 9237989
Alignment:
| Q |
17 |
gaaatctaacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaatatcaa |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238364 |
gaaatgtaacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaatatcaa |
9238265 |
T |
|
| Q |
117 |
cgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaattgagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238264 |
cgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaattgagga |
9238165 |
T |
|
| Q |
217 |
gtatagggcgttctgtagtgtggaattctgcagatgatattatttcaatgattctcaacctctgtagaggcgaatcgctgaatggtgcctccatgattat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9238164 |
gtatagggcgttctgtagtgtggaattctgcagatgatattgtttcaatgattctcaacctctgtagaggcgaatcgctgaatggtgcctccatgattat |
9238065 |
T |
|
| Q |
317 |
tcataatcactttgcaaagtatatgaataattttgaatannnnnnnnnnnncaagttaatgaaaattccttctctg |
392 |
Q |
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| T |
9238064 |
tcataatcactttgcaaagtatatgaataattttgaatatttttattttttcaagttaatgaaaattccttctctg |
9237989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 348
Target Start/End: Complemental strand, 9250882 - 9250551
Alignment:
| Q |
17 |
gaaatctaacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaatatcaa |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9250882 |
gaaatgtaacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaatatcaa |
9250783 |
T |
|
| Q |
117 |
cgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaattgagga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9250782 |
cgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaattgagga |
9250683 |
T |
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| Q |
217 |
gtatagggcgttctgtagtgtggaattctgcagatgatattatttcaatgattctcaacctctgtagaggcgaatcgctgaatggtgcctccatgattat |
316 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| ||| | ||| |||||| ||||| | | | |
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| T |
9250682 |
gtatagtgcgttctgtagtgtggaattctacagatgatattgtttcaatgattctcaaactctgtagaggtgaaccagtgattggtgcttccataaattt |
9250583 |
T |
|
| Q |
317 |
tcataatcactttgcaaagtatatgaataatt |
348 |
Q |
| |
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| ||| |||||| ||||||||||| |||||| |
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| T |
9250582 |
ttgtaaacactttacaaagtatatgcataatt |
9250551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 9258950 - 9258751
Alignment:
| Q |
23 |
taacaccatagtcattcacgcttcaagagaagacacagtggaatctattctccaacaaatttcatccaaaaccaaaattcctattgaatatcaacgattg |
122 |
Q |
| |
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||||||| |||| |||| ||||| |||||| | ||||| ||||| ||||| |||||||||| || ||||||| |||||| ||| || |||||||||| |
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| T |
9258950 |
taacaccttagtgattcgtgcttctagagaaaaaacagttgaatcgcttctcgaacaaatttcgtctaaaaccagaattccgattcaacatcaacgatta |
9258851 |
T |
|
| Q |
123 |
atctacaatggaaaacagcttcagcaacaacagagtctcagccaatgcggcatcgaaaacgacgccaatcttcaattggttggtcaattgaggagtatag |
222 |
Q |
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| T |
9258850 |
atttacgaaggaaaacagcttactctagaacagagtctctgcgaatgcggcatcgaaaacgatgcaaatcttcaattggttggtcgcttgaggagtatag |
9258751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 9268899 - 9268747
Alignment:
| Q |
70 |
ttctccaacaaatttcatccaaaaccaaaattcctattgaatatcaacgattgatctacaatggaaaacagcttcagcaacaacagagtctcagccaatg |
169 |
Q |
| |
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||||| |||||||||||| ||||||||||||||| |||||| |||||||||| || ||| | | |||||||||||||| | || ||||||| || |||| |
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| T |
9268899 |
ttctcgaacaaatttcattcaaaaccaaaattccgattgaacatcaacgattaatatacgaagcaaaacagcttcagctagaatagagtcttcgcgaatg |
9268800 |
T |
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| Q |
170 |
cggcatcgaaaacgacgccaatcttcaattggttggtcaattgaggagtatag |
222 |
Q |
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|||||||||||||| || ||||| ||||||||||| | |||||||||||||| |
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| T |
9268799 |
tggcatcgaaaacgatgcaaatctccaattggttggacgattgaggagtatag |
9268747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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