View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_5 (Length: 352)
Name: NF20354_low_5
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 32422439 - 32422102
Alignment:
| Q |
1 |
tgatttaccggtctcaattcatcttgagtagatctgatttttaataaattttgttgttnnnnnnnnnngtgcacgaatgataaaatttgatgttcaaacn |
100 |
Q |
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|||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32422439 |
tgatttaccggtctcagtgtatcttgagtagatctggtttttaataaattttgttgttaaaaaaaaaagtgcacgaatgataaaatttgatgttcaaaca |
32422340 |
T |
|
| Q |
101 |
nnnnnncgtaccactaatttggatagagcaagaggagagtcactaagaaacttgacagccatggtcatagccgtaggaagagtctcttcaccaggaatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32422339 |
aaaaa-cgtaccactaatttggatagagcaagaggagagtcactaagaaacttgacagccatggtcatagccgtaggaagagtctcttcaccaggaatca |
32422241 |
T |
|
| Q |
201 |
tcatctcaatgatgttctcactcatatttttcaaccatatattagggattgtgttggactcatctttatcttgcaagagtacatccactacatcatttgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32422240 |
tcatctcaatgatgttctcactcatatttttcaaccatatattggggattgtgttggactcatctttatcttgcaagagtacatccactacatcatttgc |
32422141 |
T |
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| Q |
301 |
cacacaatccttattatcattcctttcctctattatcct |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
32422140 |
cacacaatccttattatcattcctttcctctattatcct |
32422102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 8159379 - 8159477
Alignment:
| Q |
118 |
tttggatagagcaagaggagagtcactaagaaacttgacagccatggtcatagccgtaggaagagtctcttcaccaggaatcatcatctcaatgatgtt |
216 |
Q |
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| T |
8159379 |
tttggatagagcaagaggataatcagtgaggaatttgagggccaaggtcatggccgtaggaagggtctcttcccctgggatcataaactcgatgatgtt |
8159477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22235329 - 22235388
Alignment:
| Q |
1 |
tgatttaccggtctcaattcatcttgag--tagatctgatttttaataaattttgttgtt |
58 |
Q |
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|||||||| ||||||||||||||||||| |||| || |||| |||||||||||||||| |
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| T |
22235329 |
tgatttactggtctcaattcatcttgagcagagatatggttttaaataaattttgttgtt |
22235388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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