View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20354_low_8 (Length: 326)
Name: NF20354_low_8
Description: NF20354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20354_low_8 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 32422424 - 32422717
Alignment:
| Q |
23 |
tgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaataccaataaagacataaatacaatcatcacct---taatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| |
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| T |
32422424 |
tgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaagaccaataaagacacaaatacaatcatcacctaactaatg |
32422523 |
T |
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| Q |
120 |
cttgaaccttaatcatgttgcttatttgtttactatatgagagtgtcatacatgctaaaatacgaccagatacgtgcatactaaaatactactagatacg |
219 |
Q |
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| T |
32422524 |
cttgaaccttaatcatgttgcttatttgtttactatatgagagtgtcatacatgctaaaatacgaccagatacgtgcatactaaaatactactagatacg |
32422623 |
T |
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| Q |
220 |
tttaatgttgtaattatttcctttattaatct--nnnnnnntggaaagaattcaggtagagagattttttggtgtaaactaggtatcattcgtg |
311 |
Q |
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| T |
32422624 |
tttaatgttgtaaatatttcctttattaatctaaaaaaaaatgggaagaattcaggtagagagattttttggtgtaaactagatatcatccgtg |
32422717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 21030054 - 21029981
Alignment:
| Q |
17 |
atgaattgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaataccaata |
90 |
Q |
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| T |
21030054 |
atgaatcgagaccggtaaatcaaagactacaaaggtgccgtatgtaggcggaacacccaaaataaacaccaata |
21029981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 31611713 - 31611660
Alignment:
| Q |
28 |
ccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaa |
82 |
Q |
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| T |
31611713 |
ccggtaaaacagagatta-aaatgcgccgtatataggcggaacatccaaaataaa |
31611660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 34093237 - 34093160
Alignment:
| Q |
19 |
gaattgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaataccaataaagaca |
96 |
Q |
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| T |
34093237 |
gaatagagaccggttaattatatactacaaaagcatcgtatataagctgaatacccaaaataaacaccaataaagaca |
34093160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 8987593 - 8987659
Alignment:
| Q |
30 |
ggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaataccaataaagaca |
96 |
Q |
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| T |
8987593 |
ggtaaatcagagactacgaaggcaccatatatatgcggaacacccaaaataaacaccaataaagaca |
8987659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 43344515 - 43344592
Alignment:
| Q |
19 |
gaattgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaataccaataaagaca |
96 |
Q |
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| T |
43344515 |
gaatagagaccggtaaaccagagactacaaatgtgccgtatataggcggaaaactcaaaataaacaccaataaagaca |
43344592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 1819655 - 1819714
Alignment:
| Q |
23 |
tgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaa |
82 |
Q |
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| T |
1819655 |
tgagaccggtaaatcagagactacaaaggcgccgtatacaagcggaacactcaaaataaa |
1819714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 8571 - 8494
Alignment:
| Q |
19 |
gaattgagaccggtaaatcaaagattacaaatgcaccgtatataagcggaacatccaaaataaataccaataaagaca |
96 |
Q |
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| T |
8571 |
gaatagagaccggttaattatatactacaaaagcatcgtatataagctgaatacccaaaataaacaccaataaagaca |
8494 |
T |
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