View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20355_low_1 (Length: 423)
Name: NF20355_low_1
Description: NF20355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20355_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 2636318 - 2635899
Alignment:
| Q |
1 |
caaatctaaaagagcaaaatacattttaaatagtcnnnnnnnn---ttatcaagaatattaacactttataatataatagtacaataccttaaaagttgg |
97 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2636318 |
caaatctaaaagagcaaaatacatcttaaatagtcaaaaaaaaaaattatcaagaatattaaaactttataatataatagtacaataccttaaaagttgg |
2636219 |
T |
|
| Q |
98 |
taatggagatggagtctcaattcttggcctcttaactgcagtttctgatgaatttttcgtttctggagatttttctcttttcagctg--cacatagataa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
2636218 |
taatggagatggagtctcaattcttggcctcttaactgcagtttctgatgaatttttcgtttctggagatttatctcttttcagctgcacacatagataa |
2636119 |
T |
|
| Q |
196 |
atttttataatatgttattattctttagccnnnnnnngccctaattttagctaaccatagattgtttacatatatatgaactagcatatgagagtttctt |
295 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2636118 |
atttttataatatgttattattctttagccaaaaaaagccctaattttagctaaccatagattgtttacatatatatgaagtagcatatgagagtttctt |
2636019 |
T |
|
| Q |
296 |
tataaatttatt--------tatatatataaaatgattaataggaatgataaataaaagatagatggagacgatatcatgttgcacaaagcggataaacg |
387 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636018 |
tataaatttatttatatatatatatatataaaatgattaataggaatgataaataaaagatagatggagacgatatcatgttgcacaaagcggataaacg |
2635919 |
T |
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| Q |
388 |
accgactgtattttattaat |
407 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2635918 |
accgactgtattttattaat |
2635899 |
T |
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