View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20355_low_2 (Length: 387)
Name: NF20355_low_2
Description: NF20355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20355_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 206 - 376
Target Start/End: Complemental strand, 2793312 - 2793135
Alignment:
| Q |
206 |
taaaagcacttatgtataactagttatttcatataatctatatgttgtttt----attacaacaacaacaaca---atcgaacgacaccatagtgttcta |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2793312 |
taaaagcacttatgtataactagttatttcatataatctatatgttgttttcattataacaacaacaacaacataaatcgaacgacaccatagtgttcta |
2793213 |
T |
|
| Q |
299 |
tataaaactgcttgagctatacattgagtgtcgtccaagaaacgacctaatcttcacactaatgcgtattctattcat |
376 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
2793212 |
taaaaaactgcttgagctatacaatgagtgtcgtccaagaaacaacctaatcttcacactattgcgtattctattcat |
2793135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 2793502 - 2793395
Alignment:
| Q |
16 |
caagaaatggattggtgattttatataggaatacaggaagagcctgcaaattggaagtatgaaagaaacaggtgtcaaacagttttttcggtttaggaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2793502 |
caagaaatggattggtgattttatataggaatataggaagagcctgcagattggaagtttgaaagcaacgggtgttaaacagttttttcggtttaggaat |
2793403 |
T |
|
| Q |
116 |
cgatataa |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
2793402 |
cgatataa |
2793395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 48668084 - 48668020
Alignment:
| Q |
16 |
caagaaatggattggtgattttatataggaatacaggaagagcctgcaaattggaagtatgaaag |
80 |
Q |
| |
|
|||||||| ||||| || ||||| |||| ||| |||||||||||||| ||||||||| |||||| |
|
|
| T |
48668084 |
caagaaattgattgaagagtttatctaggtatataggaagagcctgcagattggaagtttgaaag |
48668020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University