View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20356_high_1 (Length: 403)
Name: NF20356_high_1
Description: NF20356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20356_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 5057098 - 5056707
Alignment:
| Q |
1 |
ctgtcaaaaacatcaaactcagctcagtgcagatgtaaattttaacagtttaacataaagagagaaagttgaaatcataaaaaacataatactaaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5057098 |
ctgtcaaaaacatcaaactcagctcagtgcagatgtaaattttaacagtttaacataaagagagaaagttgaaatcataaaaaacataatactaaacaaa |
5056999 |
T |
|
| Q |
101 |
taaacttacttgatgatcgttcttcttgttttccaaaattgtttttcacctataagtcctacgacatcgtcaggggagatatccataccaaatctacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5056998 |
taaacttacttgatgatcgttcttcttgttttccaaaattgtttttcacctataagtcctacgacatcgtcaggggagatatccataccaaatctacatt |
5056899 |
T |
|
| Q |
201 |
ctgagctggatttattcaaggtatcataacttttacttgtctcctcatctttactcctctctctcttgccatgtgaggaccttgtaccgatttctaactc |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5056898 |
ttgagctggatttattcaaggcatcataatttttacttgtctcctcatctttactcctctctctcttgccatgtgaggaccttgtaccgatttctaactc |
5056799 |
T |
|
| Q |
301 |
accagaacatttttggaaatcactcattgttggcttctcaatgcagtgatcccttaaattgattttgtccgcaaaagctacatgatcttcat |
392 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5056798 |
acgagaacatttttggaaatcactcatcgttggcttctcactgcagtgatcccttaaattgattttgtccgcaaaagctacatgatcttcat |
5056707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 5179343 - 5179432
Alignment:
| Q |
290 |
atttctaactcaccagaacatttttggaaatcactcattgttggcttctcaatgcagtgatcccttaaattgattttgtccgcaaaagct |
379 |
Q |
| |
|
|||||| |||||||| |||||||| ||| |||||||||| |||||||| || | ||||||||||| ||||||||||| |||||||| |
|
|
| T |
5179343 |
atttctgactcaccataacattttcggacatcactcatttccagcttctcagtgtaatgatcccttaagttgattttgtctacaaaagct |
5179432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 5185521 - 5185611
Alignment:
| Q |
301 |
accagaacatttttggaaatcactcattgttggcttctcaatgcagtgatccc-ttaaattgattttgtccgcaaaagctacatgatcttc |
390 |
Q |
| |
|
|||| |||||||||||| || ||||||| |||||||||||||||||||| |||| |||||||| || |||||||| |||||||||| |
|
|
| T |
5185521 |
accataacatttttggatataactcatttccaacttctcaatgcagtgatccctttaagttgattttttctacaaaagctgcatgatcttc |
5185611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University