View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20356_low_2 (Length: 300)
Name: NF20356_low_2
Description: NF20356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20356_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 14171417 - 14171689
Alignment:
| Q |
16 |
aaattgatgtaattttttactaccaaaacatgtgaaactgtataggaaaagctcaccaatggcacatacctcaatttgatcagcaagattgatgacaaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
14171417 |
aaattgatgtaattttttactaccaaaacatgtgaaactgtataggaaaagctcaccaatgacacatacctcaatttgatcagctaaattgatgacaaaa |
14171516 |
T |
|
| Q |
116 |
gcattgggaatacaaggaacagaaatccattttccatctttgttaacttgaagaccagatacttctgattgcaataggactgtgatagcattgagatcag |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||| |
|
|
| T |
14171517 |
gcattgggaatacaaggaatagaaatccatttcccatctttgttaacttgaagaccagatacttctgattgcaaaagaactgtgagagcattaagatcag |
14171616 |
T |
|
| Q |
216 |
tatgttcaagcagtcccatggtcaattctggatcaggacatggtggatagaaatttgcttgtgctctttgtct |
288 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14171617 |
tatgttcattgagacccatggtcaattctggatcaggacatggtggatagaaatttgattgtgctctttgtct |
14171689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 70 - 288
Target Start/End: Original strand, 14174868 - 14175086
Alignment:
| Q |
70 |
accaatggcacatacctcaatttgatcagcaagattgatgacaaaagcattgggaatacaaggaacagaaatccattttccatctttgttaacttgaaga |
169 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174868 |
accaatgacacatacctcaatttgatcagctaaattgatgacaaaagcattgggaatacaaggaacagaaatccattttccatctttgttaacttgaaga |
14174967 |
T |
|
| Q |
170 |
ccagatacttctgattgcaataggactgtgatagcattgagatcagtatgttcaagcagtcccatggtcaattctggatcaggacatggtggatagaaat |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14174968 |
ccagatacttctgattgcaataggactgtgatagcattgagatcagtatgttcaagcagtcccatggtcaattctggatcaggacatggtggatagaaat |
14175067 |
T |
|
| Q |
270 |
ttgcttgtgctctttgtct |
288 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14175068 |
ttgcttgtgctctttgtct |
14175086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 39 - 288
Target Start/End: Original strand, 14179142 - 14179391
Alignment:
| Q |
39 |
caaaacatgtgaaactgtataggaaaagctcaccaatggcacatacctcaatttgatcagcaagattgatgacaaaagcattgggaatacaaggaacaga |
138 |
Q |
| |
|
|||||||||||||| ||||||| |||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14179142 |
caaaacatgtgaaaatgtatagaaaaaacacaccaaaggcacatacctcaatttgatcagctagattgatgacaaaagcattgggaatacaaggaataga |
14179241 |
T |
|
| Q |
139 |
aatccattttccatctttgttaacttgaagaccagatacttctgattgcaataggactgtgatagcattgagatcagtatgttcaagcagtcccatggtc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||| ||| |
|
|
| T |
14179242 |
aatccattttccatctttgttaacttgaagaccagaaacttctgattgcaataggactgtgagagcattgatatcagtatgttcagtgagacccatagtc |
14179341 |
T |
|
| Q |
239 |
aattctggatcaggacatggtggatagaaatttgcttgtgctctttgtct |
288 |
Q |
| |
|
|| ||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14179342 |
aactctggatttgaacatggtggatagaaatttgcctgtgctctttgtct |
14179391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University