View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20357_low_1 (Length: 681)
Name: NF20357_low_1
Description: NF20357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20357_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 319 - 662
Target Start/End: Original strand, 35184740 - 35185083
Alignment:
| Q |
319 |
tttgccgagattatcgggtttctgtggtccattttagtttctgaagcagccctttgagttgacatagtttatctgagcttaacacggtcacacggtccca |
418 |
Q |
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| T |
35184740 |
tttgccgagattatcgggtttctgtggtccattttagtttctgaagcagccctttgagttgacatagtttatctgagcttaacacggtcacacggtccca |
35184839 |
T |
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| Q |
419 |
cagtgatcctaatcctacactgattggggttgtgttgaatcatttaccgtcataatattaggaattttaagtagtttgattgagtgattgctttgttgct |
518 |
Q |
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| T |
35184840 |
cagtgatcctaatcctacactgattggggttgtgttgaatcatttaccgtcataatattaggaattttaagtagtttgattgagtgattgctttgttgct |
35184939 |
T |
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| Q |
519 |
cactggttttgaatcgatttccagtaatatagtgagagccgtttgattattttggtgaaagaaagtgaaccttggtggtttggataatttgtgtgtgcaa |
618 |
Q |
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| T |
35184940 |
cactggttttgaatcgatttccagtaatatagtgagagccgtttgattattttggcgaaagaaagtgaaccttggtggtttggataatttgtgtgtgcaa |
35185039 |
T |
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| Q |
619 |
gtggttgatggagggatattaaagctggaaatgaatgtggtgac |
662 |
Q |
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| T |
35185040 |
gtggttgatggaggaatattaaagctggaaatgaatgtggtgac |
35185083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 35184434 - 35184668
Alignment:
| Q |
14 |
cagagactgtgattgaatggaagactgtatatgattttgcctcaaatgggcaaaaactctgatcttttcagaattttggattgtgggtttggaactattt |
113 |
Q |
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| T |
35184434 |
cagagactgtgattgaatggaagactgtatatgattttgcctcaaatgggcaaaaactctgatcttttcagaattttggattgtgggtttggaactattt |
35184533 |
T |
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| Q |
114 |
acacttggagattgcttaagatgatggtatttaacactgcttctttgagcatggaagaagattgtgtataccgttatcagtgattgagattttgattacc |
213 |
Q |
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| T |
35184534 |
acacttggagattgcttaagatgatggtatttaacactgcttctttgagcatggaagaagactgcgtataccgttatcagtgattgagattttgattacc |
35184633 |
T |
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| Q |
214 |
gtttttggactcggtgcataggctgaaggtcacca |
248 |
Q |
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| T |
35184634 |
gtttttggactcggtgcataggctgaaggtcacca |
35184668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 401
Target Start/End: Complemental strand, 19022856 - 19022821
Alignment:
| Q |
366 |
agccctttgagttgacatagtttatctgagcttaac |
401 |
Q |
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| T |
19022856 |
agccctttgagttgacatagtttatctgagcttaac |
19022821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 401
Target Start/End: Complemental strand, 22066728 - 22066697
Alignment:
| Q |
370 |
ctttgagttgacatagtttatctgagcttaac |
401 |
Q |
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| T |
22066728 |
ctttgagttgacatagtttatctgagcttaac |
22066697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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