View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20357_low_7 (Length: 294)
Name: NF20357_low_7
Description: NF20357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20357_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 41 - 272
Target Start/End: Complemental strand, 4918124 - 4917893
Alignment:
| Q |
41 |
caacacgcagagcatcctgcacatctcttctgttcatatatgtgaaagtcagatcattaagacaattagggatccaaaaatccaaattccaagcgtatca |
140 |
Q |
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| T |
4918124 |
caacacgcagagcatcctgcacatctcttgtgttcagatatgtgaaagttagatcattaacacaatcagagatccaaaaatccaaattccaagcgtatca |
4918025 |
T |
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| Q |
141 |
gatattatcaaggacatcagtgtaacccttaaaatcaccagcatcatgtacaaattggaaatacacttgcttgcaaatgccacgaactccaccataaatc |
240 |
Q |
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| T |
4918024 |
gatattatcaaggacatcagtgtaacccttaaaatcaccaacatcatgaacaaattggaaatacacttgcttgcaaatgccacgaactccaccataaata |
4917925 |
T |
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| Q |
241 |
tgttctcttttaatttgggaataattgcaaac |
272 |
Q |
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| T |
4917924 |
tgttctcttttaatttgggaataattgcaaac |
4917893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 47 - 272
Target Start/End: Complemental strand, 40499513 - 40499290
Alignment:
| Q |
47 |
gcagagcatcctgcacatctcttctgttcatatatgtgaaagtcagatcattaagacaattagggatccaaaaatccaaattccaagcgtatcagatatt |
146 |
Q |
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| T |
40499513 |
gcagagcatcctacacatctcttaagttcagatatgtgaaagttggatcattaacacaatcaaggatcacgaaatccaacctcaaagagtagcagatatt |
40499414 |
T |
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| Q |
147 |
atcaaggacatcagtgtaacccttaaaatcaccagcatcatgtacaaattggaaatacacttgcttgcaaatgccacgaactccaccataaatctgttct |
246 |
Q |
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| T |
40499413 |
atcaaggacatcagtgtaacccctaaaatcaccaatctcgtgtacaagttgga--tacacttgcttgcaaatgccacaaactccaccataaatctgttct |
40499316 |
T |
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| Q |
247 |
cttttaatttgggaataattgcaaac |
272 |
Q |
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| T |
40499315 |
attttaatttgggaataattgcaaac |
40499290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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